DreINT0109269 @ danRer10
Intron Retention
Gene
ENSDARG00000062664 | oxnad1
Description
oxidoreductase NAD-binding domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-060503-199]
Coordinates
chr19:20690826-20692667:+
Coord C1 exon
chr19:20690826-20690889
Coord A exon
chr19:20690890-20692560
Coord C2 exon
chr19:20692561-20692667
Length
1671 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
TGTTCTGTTTGTGTACCCAGGAA
3' ss Score
9.14
Exon sequences
Seq C1 exon
AAAAATGACATCCAGGAGACGGACTGACCATCTAGAGAGAACTGCTAGTGTTCATCGACAAATG
Seq A exon
GTGAGTTTTCTTAGATTTGTTTTCTGTTTTTTAGATGAAAATCTTGACTTTTTAGTTATAGATTCTTGCTTGGGTCTTTATAAATGGTTAACAAATGTTGGAGCCTTGTAGGTGAAAGTTCAGACACTTGTTTTGTGTTTTAGGTCCACCAGTGTGTCATTTGATTTGTCACAAGACTAAATTCAAGATGATGTAATCGAACGTTAAGTTGTTTCAGTTAGTAACACTTTTCAAAAAGGTTCCATTAGTTAATGTATTTTTACTAGCACGAACAAAGATGCAAAAACACATTTATTACAGTAGTAATTACAGTGTTTATTTTTTGTTAATATTAGTCGGTGGAAAAATCTTTCATTGTTGGTTATTGTTAACCCACTGTGTTGCACTTTACATTAAGGTTCGTTAGTTAACGCTAGTTACTGTATTTACTAACTTGAATTAAGAGTACAATACTTGTGCAGTATTTATTAGTCATAGTTCTATATTTACTAATGCATATTTTGGCAAATTGATTATCATTTGCATTTGGTTTAGTGGTTCGTTTACAAATCATGACAAATTATTGCAAATTATGGTTTAACTTTCTATGTTCATTTGTATTAAAGGGGACCTAATATGCAAAAATCACTTTTATAAGAGGTTTAAACACAGTTGTGTGGCAACAGTGTGTAAACATAGCCAGGCTCTAATGGTAAACATTGTTTTAATTATATTTTTTTATAATCACACTTCATAAAGCCAGCTTGTAGAAACATTTTGATTGACATTCTCCCTTTGTACATGTCATTGGAGGGGGAAAGCCCAACCAATTAGTGACTATCTCTCCCTCATAAGTGTAAACTTTTAGCTCTGTCTTTTTTGGAAAAAAAATGATCAGTTGAATTTAAAGTGACAGTCACAAAAAGGGATGTCATGGGTCCCCTTTAAAACCATGGTTATTTTCAAATGGGCATTTATTTAACACTAATTTTATTGTGAAACGATGTTATAGAACTTTATATTTAGTTGAACATGACTGTGTGTAGATTTGGAGTAATACAAATAAATAATGACTCCCGTTTGTACAGCTACATAGCATAAAACATTTTAAATTAGGGCTGTGCAATATATCGCAAAATGATTGTTATTGTGATAAATGACATGACATTATGAATAAAATAATAATAATAGTAATAATAAAATAAATGACATTTATTTTATGCATTGGTTGTTTATCTAAATTTGACCAATCAGATAGGGCATTACTATTTTTACCAGCACCTCCTCAAAATGTTTTGCTATTGGCTGGAGCGGCCCAAAGGTAAACCCAGAGCTCAAAAAAAAAAAAAAAAAAAAAAAAAATACTAATAATGGCGGAGGAATATGACTACAGCCAATCAGAGTCAGAATATCTGCTTAGGTTTTCACTCAGTTATCAGATTTAATTAGATCTTGAAATATCTTTCACCTATTTTAATTTCATTACATAAATTTAAAATCATTTAAAAAGATAGCTAATGAAAATACAATTTTTATAGGGAAATGTTATATCATAAGAAATATTGTTTTGTTGAAACATTTAACAACATTACCTATTTTCCCAGTATTATGCAGAGCTATTTTAAATATGGGAGGATACAATGTGTAAATTCTATGTATAAACCAGATTTGATGTTCTGTTTGTGTACCCAG
Seq C2 exon
GAACTTTTCTCTGCACGTGTTTGTGACATTATTAGTGAATCTGATACTGTAAAGAGACTAAGACTGGAAGTGGCTCATCCTGACTTCAGCTTCCGTGCTGGACAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062664:ENSDART00000151693:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.516 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0097019=FAD_binding_6=PU(33.7=88.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]