MmuINT0114220 @ mm9
Intron Retention
Gene
ENSMUSG00000021906 | Oxnad1
Description
oxidoreductase NAD-binding domain containing 1 [Source:MGI Symbol;Acc:MGI:1916953]
Coordinates
chr14:32905254-32908657:+
Coord C1 exon
chr14:32905254-32905317
Coord A exon
chr14:32905318-32908550
Coord C2 exon
chr14:32908551-32908657
Length
3233 bp
Sequences
Splice sites
5' ss Seq
GAGGTTTGT
5' ss Score
6.36
3' ss Seq
CCCAGACCTCTCTGCTTCAGGTC
3' ss Score
8.02
Exon sequences
Seq C1 exon
CATAATTAAATCCAGAAGGAAAACGGACCACCTAGAGAGAACTGCCAGTGTCCTCCGCCGGGAG
Seq A exon
GTTTGTGTCTCTGGGGCATGGTGGGGGTCCTGGCTGGGCAGCGTGCACACTGACTGGCTGATAGGAAAGGCCTTAGGTGAGGCTGAGCCCGGTGAGGGTCAGTGAGATTTCCTCCTCCTGAGTAGGGGATTTGTACCTAATTAGATAGCAGTGGCTGAGTGGTGCTAAGGTTGTCCACTAAGTTTGGCATGAGTGGGTGTTTCAGTGAGGGAGCACGGCCATGGCCAAGGCCCCCTCCTCACAGGTACACTGAGGAGAGAGAACTTGTAGCGCCTACACATGGCTTACCTTTGTTTCTTTTACTTTTTTTCTTTTTTTTTTTCTTTTTTGCCATCATGTCAAAGTCCTTGTGTTTCCTGCTTTCGAAGCACCTCCTAGCTGGTCAGCAGCACTGACATCTGGGACAGAAAGGTGGCCGAGCTCTTGCCCCTCCCCTGCAGCCTGTCAATCATGCCCAGGCTCTAGTAAGCTAAGCTGCCTCCTGAAGGGTGCGGAGGCCTGGGAAATAGAGGAGCCTCACCTGTGTCCCAGCCCTGTGTCCGTGTCACACACACAGTGGACAGACATTTGCTTTGACTTTTTTGAGTAGTTTCACACATATTCAGATGTATTTAGTTTAGTGTGGTACATCTCTGTAAAGCAAGGGAAATCCTGTATGTATGCACTTCTACAAACATGGTCAGAAGTTATATTGTTGTCATAGTTGCATTTTATGTTACAATATAAGGAGACACTTTAACCTATATACTGCTTAGGCCCTCCTGTTAAAACTTAATTCTGCTTCAGCGAATTGCTTTGGCACTAAGGTGATTGTTGCTTCCGCTTTGATTAAATTTTCTTTTTGAGAAGTATGTGAAGCTAATGCCGCAGAGGAAGTTAATGGGCAAATAAGAAAATAGAGATTCCCACTGATGGATCTGAACACACACACAAAAGTGCTGATCAACATGAAGTCTTGTCAGATTATAAAGGAAAAAAGGTTTACATCACAAGCTTGTGTGTACACTTCTGTGGCCTGTAGAAGTGGGTAGATAAATTAGGGCAAACTTTGTCCAAAGGTCCAGGTAGTTAAGTAATCTCATCACTGGAGGTGCAGACAGTCATGGGTGGATGTAAGCCAATCATCAGGCTTGCTGTGTCCAATCAAACACGACTCTCCAGAGTACTGGGCTTTGGCCTGCAGGTAGCAGTTACCAGTGTTTGAATTAGAGTCACCATTCAGGATCTTATAGGGCAGAAGTATCAGGACTTTGAGGAGGTTCTTCTGATCCTGGTGTAAGACAAAGACAGGCAAATATAAGCTCTGACAGTGTGATTGACAGCAGAGCACTGGGTACACAGGAGTCAGGAAGTTTCAGGACTACAGTTCTGATCCTGTTGCTGTCTTTAGGAGAAGAAATTCCTAACTTCATTTCCCTCTTTTTATCTCAAACTTTTATTCTCCCAAACAGAATGAGAAGTGGGAGGAGATGGGAGGAGCTGTGGAAACCAGCTGATCTCTGGGGCAAGCACCTCAGCGTTGTGTGACATGGGGGAGGACTCAGTCCCCTCCAGAGTGTCCTCCCAGGCACAGAGATAGGGCAGTAGAGTGTACGGTAGCAAACCACATCCACTTACCATTGGCCGGCAACATTAGAAGTGCTTTCGTTTGTATTATCTACTTTACTGTTCCCAGCAACCCTATGAAGCAAAGGTGTTACTGGTTCAGTTCATAGTTGAAGGCAGCGAGGGCATTGGCCTGAGGTACATGGTGGTAGTAGTGCCAGCATTAAAGTCTGGGCTGTGTCACTGTGGAGTCACCTGTTGACAGCTATGAGCTGCTCAAGAGAAAGCCGGTGGCCTCGTACGCCGTTTCTGATGAAACAGGAAGTAGTGGAACTGAGTACAGAAGCCTGGCTGGAAGTTGTTGGAGTAGAATCTGTCACAGACGGAGGTTAGAATCGGGAGTATAGGTAGAAGGGACATTGCCTGGTGACACAAGTCTGTAATCTTAGCACTAAGGCAGAGGATAGCAAGCTCAAGGCCAGCCTAGGCTATGTAGAGAGACCCTGTGGTTTTTTGTTTGTTTGTTTTTTGTTTTCTAAGCTGCAGGCATGGGGGCCTGACATGAAAAATCAGCCACATGTTTTCCAAGACAGGAGGAAGAAGGGATTAACAACAAGCAGAGAAAGAGAGGCAAGGGGTTTTACAGCAGAGAACAAAGGATGGGAATTCCAGGAGCTATTTTGAGGTAGTAAGACGTTTTCTAGTAGAATGTTTTAAGTGATCTCTATTGAGACTTGGTTAGACCTGGAAGTCCTGTTGAAGGACAGGCCAGACTGAGCTAGCATTGGAGTGGGAGGTTTCCAAAGCGTCCCCTGGTGGGGCTGGTTGGGGCCCCTCCATTGAGGGGACTGCATTTGATTAGCCCCTGCCCAGTGCCACGGGTGAAGCTGAACAGAAGGGAGTTGAGGGGAGTCATGTCTGTCTTCTACCCAGGTTTAATACCCAGGTGTAGAGGAGGAAGAGGAATACAGAGCAGAGGGGGAGTGAAGGACGTGGAGACACCTTACATTCAGTGGGTGCTCAGTAGAGAGCAAAATCACCCCTGAGAGTAGTGCGTCCCAAACTCCCACTAGGAAAGGGCTCTGTGGCATTCTTGGCTTAAGGTCGTGACGCTTATATTTTAGAAAAATAAAATAAATTAAGACATAAGCATACAAGCCAAGTATGGTGGTACACATTTTAATCACCACTCAGGAGGCAAGGGCAAGTGATTTCAAGGCCAGCCTAATCCACTTAGTACCAGTCCAGCCAGGGCTGCATAGTGAGGCCTCAACTCAGAAAACAAAAGTCAAGAAGGAAGCACATGAGTACAAACCCAGACTCCTGTTTCTTTGCTCTGTAAAAGGTGCCTAATGCTTTCTGTGAACGTCTGCTGCTAGCATGCCATGGACTTCTTACTCAGAAGCAATCATGGCCTCGCCTGGCCTACTACTGAAGGGGACTTTAGATGCCAGCCAGGGCTGCTGAGGGCATCACACACAGCTCTTCAGGGTGCCAACACCCAGATGGATACTGGTTACACAGTCCCTGTAAGGACGTTTGTATTCAGAGTGAGACAGCATTGTAGTACATCTCAGAAAGTTCACTCAGTTTGCACACTTGATGCAGAGCAAAGCCGTGTGTGCTGTGCCTTGTTGGACAATTTTCCAAAACCACATGTCTCTAAGCCCCAGACCTCTCTGCTTCAG
Seq C2 exon
GTCATGGCTGCAGCTAAGGTGTGTGAAATCACTCACGAGTCTCCATCAGTGAAGAGCCTCCGTTTGCTTGTTGCTGATAAAGACTTTTCCTTTAAGGCTGGCCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021906-Oxnad1:NM_145460:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.097 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0097019=FAD_binding_6=PU(37.6=88.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: