RnoINT0106308 @ rn6
Intron Retention
Gene
ENSRNOG00000019760 | Oxnad1
Description
oxidoreductase NAD-binding domain containing 1 [Source:RGD Symbol;Acc:1311534]
Coordinates
chr16:8212957-8215921:+
Coord C1 exon
chr16:8212957-8213020
Coord A exon
chr16:8213021-8215814
Coord C2 exon
chr16:8215815-8215921
Length
2794 bp
Sequences
Splice sites
5' ss Seq
GAGGTTTGT
5' ss Score
6.36
3' ss Seq
CCCAGACCTCTCTGCCTCAGGTC
3' ss Score
7.01
Exon sequences
Seq C1 exon
CGTAATGAGATCCAGAAGGAAAACTGACCACCTAGAGAGAACCGCCACTGTCCTCCGCCGGGAG
Seq A exon
GTTTGTGTCTGTGGGGCATGGTGGGGTTCCTGGCTTGGCTGCTTACACACTGACTGGCTTATAGGAGAGGCTTTAGGTGAGGCTGGACCCCATGAAGGTCAGTCAGGGAGATTTTATCCTCCTGAGCGGAGCATTTGTAACTAATTAGAAAGCAACAGCTGAGTAGTACTAAGGTTGTCTGCTAAGTTTGGCATGAGTGAATGTTTCAGTGAGGGAGCCCAGCCGTGTCTAGGCCCCCTCCTCACAGATCCACTGAGGTGTGCTACAGGAGAGGGAACTTGTAGAGCCTACACATTGTGAAGGGCTTACCTGTTTTTCCTTTTTTTGCCATTGTGTGTCAAAGTCCTTGTTTATCCTGCTTTGGAAGCACCTTCTAGCTCGTCAGAGCAGCACTGACATCTGAGACAGAAAGGTGGTTGAGCTCATTGCCCCTCCCCTGCAGCCTGTCAATCATGCCCAGACTGTAGAAAGCTAAGCTGCCACCTGAGGGTGCCGAGGCCTGGGAAGTAGAGGATCCTCACCTTTATCCCAGTGAGTAGCCGTTTCCATTTCAAACACGTTTCTCACACATGCAGGTGTGTTTACTTTAGTGTTGTCCATCTCTGTAAATCAGGGAAAATCCTGTGTATGTGCACTTCTACAAACATGGTCAGAAATTATATTGTTGCCATAGTTTCATTTTATGTTTCAATATAAGGAGACACTTTAACAAACAGGCTTTTAGGCCCTACTATTAAAACAATTTTGCTTCAGAGAATTGCTTTGGTACTAAGGCGATTTTGGTTTTTTTTCTTTTTGAGACGTATGTAAAACTGATTCAACCGAGTAAGTTAATAGGCATATAGGAAATAGATGGGCAGAAGTGTGGGGACGTGGAGGAGGGTCCTGTGATCCTGGTGCAGGACGGAGAGAGGCTGCTGTAAGCTCTGAGGTGTGATTGAAAGGGAAGCAGCTGGTACCGAGGAGTCAGGAGTCCAGGACTACAGTTCTTCTCCTGGTGCTGTCTTGAGGGGAAGACATTTCCAACCTCATTTCCCCCTCTTTATGTCTAACTTTTACTTTCCCAAACAGAACGAGAAGTGGGAAGAGGGGGAGGAGCTAAGGAAACTAGATGATTCCTGGGGCAAGCACCTCAGCATTGTGGGTCAGGGGTGACCTCAGTCCCCTCCAGAGGGTCCTCCCAGCCACAGAGATGGGGTAGTAAAGCACACGGTAACAAACAACACACACTTGCTGTGGACCAGCAACGCTAGAAGTGCTTCTGTTTGTATTATCTACCTTAGTGCCTCTAGCAACCCTCTGAAACAAAGGTGTCACTGGTTCAGTTCAGAGATGAAGGCAATGAGGGCATTAGCCTGAGTTACTTGGTGGCCATAGTGCCAGCGTTAAAGTCTGGACTGCCTCACTGTGGCGCCCACTCTGTTAGCAGCTGTGCTCTGCTTCTTTGTGTAAATACTTCGGGGCTGTTCAAGGTAACGCCAGTGGCATCATATGCCATGTCTGATAAAACAGGAAGGTACTAGAGAACTGAACAAAAGGCTGGCTGGTAATGCAGACTATGTCACAGATAGAGGTTGGGATCGGGGGTATAGGTAGAAGGGACATTTCCTGGTGACGCTAGTCTGTAGGTTACTAAGGCGGAGGACAGCAAGCTCCAGGCAGCTGTGTAGGGAGACCCTGTCTTTTTAAAGCTTCAGGCATAGGGAGCTGTCATGAGGCTCACCCACATGTTCTCCAAGACAGGAGGAAGAAGGGTTAACAAGGAACAGAGAGAGAGGCAGGGGGTTTACAGCAGAGGACCGAGGATGAAAGTTCAAGGGCTATTTGACGTAGTAAGAGTTTTTCTAGTGGGATTTTTTAAGTGATCTCCCACCAAGAGTTGGTTTAGACCTGGGAGTCCTGTTGAGGAAAAGGCCAGACTGCGCTAGCTTCAGGGTCAGGGGTTTCCACAGCGTCCCTTGCTGGAGCTGGCTGGGGGCCCTCTGGTGAGGGGACTGTGTTTGATCAGCTCCTGCCCAGTGCCACAGGTGGGGTTGAACAGAAGGAAGTTGAGGGGAGTCATGTCTGTCTTCTGCCCTTGGTAATGCCCAGGTTTTGGAGAAGGAAGAAGACAGAGCAGAGTTGGGGAGAAGGACATGGAGACATCTTTTACATTTGATGGGTGCTAAGGATGGGATGACCTTCACTGAGTAGTTCCCAAGCCACTCAGCAAAATCATCCCAAAACTCCCAGGAGGAAAGGGCTCTGGGGTATTATTGTTTTAAGGTCACGAATGCTTACATTTTAGAAAAATAAAACAAATTAAGACATAAGCACATGAACCAACATGGCAGCACACATATTAATCACCGTTAGGGAGCGAGGGCAAGTGAGTTCAAGGCCAGCCTGATCCACTTAGTTTCAGACCAGCCAGGGCTGCATAGTGAGACCCCAACTCAGAAAACAAAAGGCAAGAAGGAAGCACATGAGTTCAAACCCAGTTTCCTGTTTCTTTGCTCTTTAAAAAGCGCATGATGCTTTCTGTGAACGTCTGCTGTTAGCCACAGACTTCTTAACTCAGAAGCAACTGCGGCCTCCCCTGGCCACTGCTGAAGGGGACTTCATCACATCACAGACTCTTACATAGTCCCTGGGAGGACACCTGTACTCAGAGTGAGACAGCACTGGAGTCTGTCAGTCTCAGGAAGTTCATTCAGTTTGCACACTTGGTGCACAGCAAAGCCATGTGTGCTGTGCCTTGTTGGGATGTTTACCAAAACCATGTGTCTCTAAGCCCCAGACCTCTCTGCCTCAG
Seq C2 exon
GTCATGGCTGCAGCTAAGGTGTGTGAGATCACTCACGAGTCTCCATCAGTGAAGAGCCTCCGTTTGCTTGTTGCTGATAAAGACTTTTCCTTCAAGGCTGGCCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019760:ENSRNOT00000026751:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0097019=FAD_binding_6=PU(43.8=88.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]