GgaINT0096331 @ galGal3
Intron Retention
Gene
ENSGALG00000011239 | OXNAD1
Description
NA
Coordinates
chr2:34257522-34260364:+
Coord C1 exon
chr2:34257522-34257585
Coord A exon
chr2:34257586-34260257
Coord C2 exon
chr2:34260258-34260364
Length
2672 bp
Sequences
Splice sites
5' ss Seq
GAGGTTAGT
5' ss Score
7.15
3' ss Seq
CTTATTTTTCTTTTGTTTAGGTA
3' ss Score
10.02
Exon sequences
Seq C1 exon
CACAATACAATCAAAAAGGAAAATGGATCACCTTGAGAGAACAGCAAATAATTTTCGCCAGGAG
Seq A exon
GTTAGTGTTGTGTTCTTTAGGATGTTAGTAAGTTTTCTTTCTGGTGAAGAAATGGGACAATTGTATTTGATTCATAGGCTTCATTTTCTCTTCAGATGGAGTCTCTTTCACATTTTTCCCCCTCTTTTTTTTTATTTGATGCTGTTGTAAAAGTGGTGGATTTTGTGGTCGGTAGAGGAAATATAGGGAGGTATAAAAATTATTGTGATTCTGTTTACTCCAAGTTAGACAGGAAATTGAATAGAATTCTGGTCATGTGGACTTTGATAGGCAAACAGAGACTTTTTCAGAGAATTAGGGCACTTTTTGACTGAAAAACCCTGTCTTTAATCCCCAGAACTTTGGGCAGTGGTGCCTAGTTTTTCTTCATTCTTTACATAGCTTTTCTCAGTGTTAAGGAGTTGATGATGGCAGGCCAATCCTGCCTTTGCCACAGAGCAGGATGAACAGTATGTGCCTCACACAATGCAGCATTAATGGGCGTGTATATTATAGAATATATACATATAGAAGAGATTTAGCACCTGTGGCATAGGCTGTGGGTGGATGAGACAAATGTGGGCTCATTGTGCCTGTTGGCAAAGCTGCTTTGGAAACCTTTTGTCTCAGAGCTCTGCTTCAGCAGCTCATGTCTAGCATTAGCACTTCCTTGGGTAGGTGCCAGCAGCCTTTCACATGGGTCTGACTTGAGAGCTCTGAGCTGGTACGGACAGCTGCATAAGGCTTGAGGTCTGAAGGAAACTGTATGAGCTAGGTGGAAGAAATGGGCTCAGTGGATGTCAAGGGGAAGTTCTTCACAGAGAGAGTGGTGAGGTTCTGGAACAGGCTGCCCAGAGAGGTTGTGGAGGTTCCATTCCTGGAGGTGTTCAAGACCAGGTTGGATGGGGCCCTGGTCTAGTACCAGATCTGGAGGTTGGTGTCTCTGCCTGTAGCAGGGGAGTTGGAACTTGATGATCTTTGGGATCCCTTCCAACCCAAGCCTTTCTATGATTCAGTTCTGTGACAAATTCTCCGCGTGTCAGAGGGTTCTTTCTTTCTTTTTTTTTTTTTTAAAATGTTTGATTTATTCTTTGTTACTTTTTCCCCAGCCACTTTAAAATCAGTTTATTTTAAATCCTCTGCTTGGTTTTAAATTCCATGTAATCACCAGCTGGCTTCTTCTAGTCTGTATTGCCTTATTTGGCCATTGCAGTCCTTTAGAAGGATGAAAGAATCATAGGTCTGTGTTGCATTAGCGTGCATGCCACACCTGTTGAAGACTGGTAACATGAAGGACAAGAACAAGTGCCTGATGCTTTGAAATAAAATGGCAAGGTTCCAGATAGTGTCCTCCTATCTCACTGCAGTATTGCTCATGGCCATCACACTTGTGATGTTCCAAAAATACTGTCTGAAGGTCTTTGATCACCCTGACAAATTTAACTTTTGTAGTATACTTATTAAGGATTACATTTCCAGTGCTCTATCGGATGTATTGGCCAAAGAACAAATTAGGGAGTGCTCAGAAGAGTAAAGAAAGGAAGGAAGAAGATCCAAGCTTAACGTCAATTTCCTGCACTTAAATGTTTCTCCATTAAAACAACCATTTAAGTAATTAATCTGACATTTGTCTTGTTAACAGAGAAAGACTGCTTTTCCCTTTTAATAGTGTCTGCTAAAGTGGAAAGGAAATGTTTGCTGCTTTATTTTAAATTGGCAAACGTCCTGCTGTTTTGTGGGACAGTAGATGTGTTCAGATGCTGCTTTATGAAGAAATTAATTTCCTGCCATGTGTTTTAAATTAGAGCATAGCTTCTTAAGTTTTGGTGGGTTTTTTTTCAGTCTATTTGATCTTACACAAATGAGAAGTGATGAAGTTGTGGCGAGGTACTCTATTTCCTAATGTGGCAAATGGCATTTGCTTTTTTAATAGGGGATGTATATTGGCCTATTTAGAAAATATGTACAGCATTGCTTTATTTGTAGAAGTAAAAATATAATAATCATCATCTCCTCTCCATCCCTCATCATCAGGCATTTTTATCTTATCATCTATGTTGTACTGATGGGCATCAAAGTGTTTAAATTTAAGTGGGAAACGCCTCCCCAAGTGATCCTGTTGCAAGATCTGCTCCTTATTTCCTTCCTTCCTCCCACCCTTCCTTCCTTCCTTCCTCCCACCATTCCACTACGGCTTTCCCATCCCATCCCCTCCCATCTGGTTGCCAAACCAAACTCTTATGTTAATGAGAAATGAATGCTTGTGTCACAGTTTCCTGTGTTCATAGATCACATATATGGTCAAATGGGTATATGTGTAAATCAGTAACACAAGGCATTCAGTTACCTGAAACTAGATACAAATCCAGAATTCTCCCAGTGACTTCAGTAGCAGCTGAGCTTTTGCAAGTTTCCTTTGTCAATTTTCACATCAGAGATATGTTGTTGTTGCTGGAAAGATAAAGGAGCGTTTGCTTTGTGCAAACGTGGTGGTCTGTAAGTACAAAACCATTTCTGCATTCATTAACTGGGTCTGTTCTTGTTTCTGTACCACAATGAAAAAATGTTGGTGCCTTAGGTAGTGAAATAGTGCAGGTAATGTGAAGTGCCAGGTATCTCACTTACAGATTCTGGACTACTTTTGCTGCAAATGCTGTTCACATCATGCAGGTACTTATTTTTCTTTTGTTTAG
Seq C2 exon
GTAATTTCACAAGCCAAAGTGTGTGGCATCACCAATGAATCAGAGACAGTCAAGAGACTACGTTTGGCCATCACAAATAAAGATTTTACTTTCAAAGCGGGACAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011239:ENSGALT00000018329:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0097019=FAD_binding_6=PU(34.8=88.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]