DreINT0116746 @ danRer10
Intron Retention
Gene
ENSDARG00000010773 | pnpla6
Description
patatin-like phospholipase domain containing 6 [Source:ZFIN;Acc:ZDB-GENE-050107-4]
Coordinates
chr1:45214588-45216974:-
Coord C1 exon
chr1:45216918-45216974
Coord A exon
chr1:45214676-45216917
Coord C2 exon
chr1:45214588-45214675
Length
2242 bp
Sequences
Splice sites
5' ss Seq
ATGGTCAGT
5' ss Score
6.57
3' ss Seq
TTTTTTTTTCAAATCCACAGGTG
3' ss Score
10.83
Exon sequences
Seq C1 exon
ACGGACAGATTTGGAAACATCAAGAGTTTAGTGGAGGATCAGCTGCAGACCAGCATG
Seq A exon
GTCAGTAAACATATTTGTTTATTCATTCATTCATTTTCTATTCATCAGGTTTCGCCACAGCGGAATGAACCACCAACTTATCCAGCATATGTTTTACGCAGCGGATGCCCTTCCAGTTGCAACTCATCACTGGGAAACACCCATACACACACATACACAGACAATTTAGCTTACCCAATTTACCTATACCAATTCTTTGAACTTGTGGGAGAAACCGGAGCACCCGGAGGAAACCCACGCGAACATGGAAAGAACATGCAAATTCCACACAGACACGCCAACTGACCAAGCCGAGGCTCGAACCAGCGACCTTCTTGCTGTGATGCGATCATGCTACTCACTGCGCCACCTGGACGCCCACATATTTGTTTAATCTTTCACAATGAATTACTAGTAAACATGTCATGCACATGGCAGATGAGGTATTTCTTGAAACATTAGATAATGGGTTGGAGTAGGTAAGGTTTTTTTTTTTTTAATAAAGCTATATTTATTTAATCAAAAATGCAATAATAACAGCAATATAGTGAAGCATTACTGTTAAGAGAAGTGTTTTCTCTTGATATATTTTTTAATTATAACATGATCCTTCGGATATAAGATATCTAAAAAGATCATTTGTAGCTGAAGACATATTTATTCTTATTATTAAATACGTTAAATTTGTTCTGTTGAAGCCATAAAGAAATGATGTAATAATGTTGAAAAAATTCAAAAGTAACTTTTGATTAAATTGATTTATTAACTACATTTTACTGACTCCAAACATTTTCTGATAAATGTGAACATAACAAATATCCAGATTCAGATTTGAAGTAATCAGATCATTTTAAAAAAAGCTTATAAAATTAATAAAAAGTTCAAAATCCTGTTAAAATGTTTAGAATTTTTCTCAACCTTGAATTCATGACACATCTCTCATTTTGTCACTTAAAGGTGCAGTATGTAAGTTTGACACCCAGTGGTTGAACTAGGTATTGCAGTCCTGTATCAAAACAAACGCAAGCGCAGGTTGCCAGATTCACGACAGGAGTGAGTGATCAAACCGTGTTCTAAATAATAGCAACGGCATGCGATAAAGTGAATATTTTTTTTATTAGGAGTTTTTGTCCTAAACAACACCTCGGATTGATATATTACAAACGGTTTCTATTTCTCACAGGTAAACAATAGAAAACGGCAGTGATCTCCTCAGATACACCTCATGTGCTTTATTCAGTGTTAAATGCTAACAATGTGAGTTTAAATGATATTTTACATGATATTTAGTGGCATACTACTGAAGGCAGCAGCAGCAGCAGATAGTTCACCTCAGATCTTGAAAATAAAATAAACCGTTTGAGATTGAACTTTAAAACTAAACACATATCAGGTATTCAGTATTCAATCATGTACATTTAATAATGTTAAAGAGGTTTAATATGTATTAATTAGATTATAAACCTTACCATTTCGTGAGTGAGTGCATATTCTGTGCTTCTGAATGGATGTATTAAAATTTCTGTCGTGTTTTGTCTGGTTCAATGAGCCAAATTGGTGATCACTGCGTATCGTCATGTGCGTGTTGTTAGGACACTTGGTTACAATGTAACCTGCTCACCTAATGTTTACATTCATAATATTTATATAATTTGCTGATTAATAACCTAAGTGGAATTCTGAATCTGCGTCTCATTTTAGAGCCTGCTACTGTCCACTAGAGGTCTCATTTCGGTCACTCACTCATGCTTTGAGAGCCTTTCTGACTGAATAAATAAAATATGCGCTTTCCCACCAAGGCAACCCTGGGTGCTGGAATATAATTGGCTAAAGTGGCAGTGGGCGGGTTAAAACTACACATTTTTCACATTTTCATAGCAGAATATCTGACTTCAGCATTGTTTTTCAGATGAAATGTTATTGTTTATTAATTGCTATTGTAATAATGTTGTTACTTGGGATCTTTCTTAAATGTCTGCAAACATATTATGTTATTGTCTAAACTTACATTGGGCAGGTTAAAATTACCAAAACAAAGACAGCCGTTCCAGCACGGAAAACACATTTTCAAAGCAGAATATCTGACTTCAGCATTGTTTTTCAGATAAACAAGAATGTTCACTTAGCAGGTTTCTTTAATAACTTCAAACATATTATGGTATTTATGCTTTAGAAGAGTCAAAATCTTACATACAGCACCTTTAAAGAAATGCCATAATAAACATCACTCTCATTCTTATTGTTTTTTTTTTCAAATCCACAG
Seq C2 exon
GTGGTGGGGATTGTAATCGGCGCTGGAGTCGTCATCGTTCTCATCGCCGTCCTCATATTTTTTGTCTTGCGCCGGATGCAGCTCCGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010773:ENSDART00000140890:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.158 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0129912=Lamp=FE(32.1=100),PF063056=DUF1049=PU(18.0=47.4)
A:
NA
C2:
PF0129912=Lamp=FE(51.8=100),PF063056=DUF1049=FE(58.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]