RnoINT0114504 @ rn6
Intron Retention
Gene
ENSRNOG00000000977 | Pnpla6
Description
patatin-like phospholipase domain containing 6 [Source:RGD Symbol;Acc:1564611]
Coordinates
chr12:2070090-2070575:+
Coord C1 exon
chr12:2070090-2070158
Coord A exon
chr12:2070159-2070487
Coord C2 exon
chr12:2070488-2070575
Length
329 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
3' ss Seq
CTGTGCCGTTCGTTCCGCAGGTG
3' ss Score
13.52
Exon sequences
Seq C1 exon
GACTGCAGGCTACCAGACCTGCTCCCTAGTCCGAAACAATCAATGGAGGCCCCACTGCAAACCGGAATG
Seq A exon
GTAAGGGTTGGGGAATTTTTGCACCGGACTACAACTCCCGGCGGGCTTGCGGCACACCACGCGATTCTCTCTTCGAGAACCGTGTGTGAGGACGAAACTACGTTTCCCGGCATGCATCACGGGATACCTAGTCTCTGGGAAGGTTTAGTCGCTCCCCCCGCCCCCGTAGGAGGTGGGAAGGAAACAGGCATTGACCCATTCTGCAGATGGGGACACCGAGTCACGAGCTGAATACGACCTCCTCCGGGTCAGAGGTGATTCGAAAGGCCCTGGAGGAGGGCTTGGGGCGACGGATATGCGTTGCCCAGCCTGTGCCGTTCGTTCCGCAG
Seq C2 exon
GTGCTGGGCGTGATGATCGGGGCCGGAGTGGCGGTGCTGGTCACCGCCGTACTCATCCTCTTGGTGGTGCGAAGGCTACGGGTGCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000977:ENSRNOT00000001298:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.217 A=NA C2=0.044
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]