MmuINT1027094 @ mm10
Intron Retention
Gene
ENSMUSG00000004565 | Pnpla6
Description
patatin-like phospholipase domain containing 6 [Source:MGI Symbol;Acc:MGI:1354723]
Coordinates
chr8:3516681-3517164:+
Coord C1 exon
chr8:3516681-3516749
Coord A exon
chr8:3516750-3517076
Coord C2 exon
chr8:3517077-3517164
Length
327 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
CTGTGCCGTTCGTTCCGCAGGTG
3' ss Score
13.52
Exon sequences
Seq C1 exon
GACTGCAGGCTACAAGACCTGCTACCTAGTCCGAAACAATCGATGGAGGCCCCACTGCAAACCGGAATG
Seq A exon
GTAAGAGTTGGGGAATTTTTGTACCGGACTACAACTCCCGGCGGTCTTGCCGTGCACCACGCGATTCTCTCTCCGAGAACCAGGCATGTGCAGGTGAAACTACGTTTCCCGGCATGCATAGCGGGAGACCTAGTCTCTCGGAAGGCTTAGTTGCTCCCCCCACGTAGGGGGATGGGAAGGAAACCGCATTGACCCATTCTGCAGATGGGGACACCGAGTCACGAACTGAATACAACCTCCTCCGGGGCAGAGGTGATTCAAAAGACCCTGGAGGAGGGCTTGGGGAGACGGATATGCGTTGCCCAGCCTGTGCCGTTCGTTCCGCAG
Seq C2 exon
GTGCTGGGCGTGATGATCGGGGCCGGAGTGGCGGTGCTGGTCACCGCCGTGCTCATCCTCTTGGTGGTGCGAAGGCTGCGGGTGCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004565:ENSMUST00000004681:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.238 A=NA C2=0.022
Domain overlap (PFAM):
C1:
PF094725=MtrF=PU(33.3=52.2)
A:
NA
C2:
PF094725=MtrF=PD(61.1=84.6)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types