DreINT0121927 @ danRer10
Intron Retention
Gene
ENSDARG00000103699 | ptpn13
Description
protein tyrosine phosphatase, non-receptor type 13 [Source:ZFIN;Acc:ZDB-GENE-070410-72]
Coordinates
chr21:9379965-9382576:-
Coord C1 exon
chr21:9382402-9382576
Coord A exon
chr21:9380116-9382401
Coord C2 exon
chr21:9379965-9380115
Length
2286 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCAT
5' ss Score
4.62
3' ss Seq
ATTTTTTCTCCTTTTTCTAGATG
3' ss Score
11.48
Exon sequences
Seq C1 exon
AACAAGCGTGGGAAGGTGGAGGAGAGTCAGAGGAAGGTTGGGGTGGTCTTACTGAATGGTCAGAAGCTGGAGCTGTGCTGTGATGTGAAGGCGGTCTGCAAGGATGTCTTGGACATGGTCGTAGCTCATATTGGATTAGTGGAACACCATCTCTTCAGCCTCGCCTATCTTAAAG
Seq A exon
GTGCATTAAACATCTTCCTTTAACATAACGTGAAAGAAAAAAAAACATAAACAAAATTTGAGCAATTCATCTGGACAATCTGTTGTTGGCAGCTAAAAAAAAACTCATGAAATGTGCTTATATTGCTCTTTCACTCCTCTTAGTATAACCTCAAATAGGACTAAGCTGTAACCTTGAAAAATATAACAGATCAGAACAGATGTATCACAATATAAAACAATTTCTTTAAATTAAATATTTAAAAAAAAAAAAAAAAAAAAAAAAATATATATATATATATATATATATATATATATATTTATTTATTTTTTTATTTATTTTTTTATTTATTTTTTTTTTAAAGAATTTTAAAGCATATACCAGAAATCTACTCACTCATATGTGATCATGTTTCTCAATTTACCTAGCATTTCAGGGCAAACGTTTGATTAAAAATGTAGAAATATTAATATAATATAAAACACTTAAAAAAAAAATAAATGATTACAGGTCCAACATAAAAATAACACATTTTAAATATCACTAAATAAAATGCAAAATGCAAACGTTGTGCTTTCAAGATGACAATTTTCTCATGATGCTGTAATATTGTGCTTATATGAAAAAGTATTGCCGTAAACAATGTATTTTGTTGCACCATGAAATAAACAATAGAACATAATATGTATAGACTTTTTATTTTGTCCATACTATATATATATATATAGTCATATTGCACAGCCATAATTGTTAGAGAATTCAAATTAAAATGAGGAACCTTTACGAAAACATCAGGGCCATTTAAATGCACATCTGAACCATATCCAATTCCATTCCTATACTGCCTCCTTTCATTTTTCGTGTGCCGTTCAATCTGATAAAAAAAACAACTAAATATCTTTGTAAGAGAGGTTGTTTCCTACACTATTTTGTTCATTCATCATTCATTTTTAACCGCTTTTCCGGGGCCGGGTTGCAGAGGCAGCAGTCTTAGGAGAGAATCCCAGACTTCCCTCTCCCCAGACACTTCCTCCAGCTCCTCTGTGGGATCCCGAAGCGTATCCAGGCCAGCCAAGAGACATAGTCCCTCCAGTGCATCCTGGGTCTTCCCCAAGGTCTCCTCCTGGTGGGACAAGCCTGGAACACCTCCCTAGGTAGGCTTCCAGGAGGCATCCGAAACAGATGCCTGAGCCACCTCAGCTGACTTCACTCAATGTGGAGGAGCAGCGGCTCTACTCTGAGCTCCTCCCCGGTGACAGAGCTCCTCACCCTGTCTATAAAGGTGCACCCTGCCACCCTGTGAAGGAAACTCATTTCGGCCACTTGTATCTGAGATCTTGTCCTTTTAGTCATGACCCAAAGCTCATGACTGTAGGTGAGATTAGGAACATAGATTGACCGGTAAATTGAGAGCTTAGCCTTTCGGCTCAGCTCCTTCTTTACCACAACGAACCGGTACATTGACTGCATTAATGCTGCCGCTGCACCATTCCACCTGTCAATCTCACGTTCCATCCTTCCCTCACTCATGAACAAAACCCCAAGGTACTTGAACTCCTTCACCTGGGGTAAGGACTTTACTCCAACCTGGAGATGGCAAACCACCTTTTTCCAGTGGAGTACCATGGCCTTGGAGGTGTGGATTCTCATCCCAGCCGCCCCTGAGACGCCCCTTAACAGCACCTCTGACCCCATACTCCCACAGCAGCCTCCACAGAATGCCACGAGGGACCTGGTCGAATGCCTTCTCCAAGTCAACAAAACACATGTGGACTGGTTGGGCATATTCCCATAAACCCTCGAGCACCCTGGTGAGGGTATAGAGCAGGTCCAGTGTACCTAGGCCTGGACCAAACAGCATTGTTCCTCCTGAATCCTTGGTTCAATGGTTGAACCTAGAACACTATTTTGTGTCTTTCTTAATTTTATTATTATTATTTTATTATTATTTTAATTTTTTCATTGTTTGTTAAGACTAAATGAAAGCGGCATGCTGCATTGATTTATTTCTCATCAAACCTCCTTCAGTTAATTTCCTCTTTTTCAAATAATATTTAGGAAATGACCTGTTCGTGTACACTCTGAAATTTGATTAGGAAGTATTTAAATATGACAGAATAAATTATTTTGTTGTACTTCATGACTAATGAACATGGCTGCCTTGTCTCCACAGAACATCCATTAAATCCTCCGACTCATTTTTAAAAATGCAAATCAAACCTTGTTATGATTTATCATAACTTGTTATGCTGCATGCAACTCCTTTAGAGTGATCTGTTTATTTTTTATTTTTTCTCCTTTTTCTAG
Seq C2 exon
ATGACGAGTTCTACTTTGTTGAATCTGATGCCAAACTTTCAAAAGTAGCACCTGACGGTTGGAAGGACGACCCTAAGAAAAAGAAAACGGATGTCATTTTTAATCTCTTTCTGCGGATCAAGTTCTTTCAGGACGACGTCAGTTTGATACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103699:ENSDART00000162225:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF093795=FERM_N=PU(50.0=74.6)
A:
NA
C2:
PF093795=FERM_N=PD(48.9=84.3),PF0037313=FERM_M=PU(5.1=11.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]