DreINT0125523 @ danRer10
Intron Retention
Gene
ENSDARG00000044574 | rbms3
Description
RNA binding motif, single stranded interacting protein [Source:ZFIN;Acc:ZDB-GENE-060929-244]
Coordinates
chr16:39732246-39735272:-
Coord C1 exon
chr16:39735166-39735272
Coord A exon
chr16:39732290-39735165
Coord C2 exon
chr16:39732246-39732289
Length
2876 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
CTGTCTGCCTTGTGTTTCAGAGT
3' ss Score
11.61
Exon sequences
Seq C1 exon
CCCCGACGGAGCCGCTGCTGTGCAAGTTTGCAGACGGGGGACAGAAGAAGAGGCAGAGTCAGAGCAAGTACCCTCAGAATGGACGACCGTGGCCCCGGGAAGGAGAG
Seq A exon
GTGAGCTATCGTGCACTCAAAAATCTACCGCACATCCTGTAAACTACTCTGTTTCATTCTGCCTTTCAACAGCAGAAATAGTTAGAGTAGCAGTCTAGTAAAATGTTTGTCTGTCTGTCTGTCTGTCTGTCTATCTACCATATCCATCCATCCATCTTCCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATGTGTCTGTCTGTATGTCTTACTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTATGTCTGTCACCAGGCATGGGATGCTTTTAAATAGCTTTAAAAAGTATGTGCACTATTTAATTATTTATTTTATTAATTATTTATTTTTATTTTATTTCATAATTTAATTAAATTACTTTAGAGTTAGCAATTGGGTTCAACATTATAATTTGAGTGTACTTACAAGTGCTCTTGCCAGGTAAAAATTCAAATAGTATGTGCAAATTACTCTGACATGAAAATATTCTGGTCATGTTCATGATACTGTTTATATTTTAGCAAATACAACTTTGATCTTGTTGATTGTAACTATGGTGATGATTTGATGATGTGCGAAACGCGCTCTGCAGCACAAAACTCATCCTCTAGTACTTAAATCGGCCAGTCATTGACTCACTGATAAATGAAATCTTACTCCTGCTGATCTGTGATCGAAATCTTTCATTTTTATACTGTAGTGTATTTTCTCTTACACAACTAAATGATATTTATTACTATTAAAAAATCAAAATGACGTTGATGGCGGTGACGTGGTGGGCAAGTGACAAAATTGGTAACATAAGCACCTTTCACACAGTGATACCAATAAATATCTGTAAAGTTTACTGAATGACTTTAATTCAAAAAAGCGCTGTTCACACAGGCAAGGATGTTGATGATAATGATTTCACTTTTTTTTTTTTTTTTAGCATTTATGCAGCTGCTTTTTGTCCCAGAGACATCCAAACGCAGAAGCACTAACCCCTGCTACATGTTTACGCATTTAACTACATCACAAACTTTGTGAATGGATAAGCATTGTTAACAACTTCGACGAAAACATATGGAGGAACGCTTTGACATGTCGAGATATACATAATATGTGTGTGTGCTGGCGCTCACTGGAGCACTTGACGTGCACACGCGTTAAACAACTGAAGCAGAGCTTGAAGGTAAATAAACAGCGGTTTATCAGAAGCATTTTATCAATAATTTTTTCCATAGTTGGCATTAAGAAGGAAACATAGAAACTTATTTGACTAACATCTAGCAGCCGAATGTGTCTTAAAAAATATTCAAAGGCTTTTATTTCATAACCAGCACAGATGTGAATGCGTCTGAGTGTTCTGATTGGCTGGAATAGATGTCTCTCATCAGTGCTTTCTAATAGTGAACATGCTCTTTCCGGCAATTTTTCTTCTGCGTTCACACAGAGCAGTATTCCAGCAAATTACCGTTAATGTTACAACTTCTCTTTCTGGAAATTTGCAGAAATTAATTTACCGTTATTTTCAAAAAGTGCCTGTTCACAAATCCAGACCTTTCTGGAAAATTGCAGAAGGGTCTGCATGTGTGAAAGGGGCTATTAACTATCGCACCAAGCCTAAACTTTTAAAATCTCCAATAATGATTCTCTGAATGGAACATAAATTTTGTCAAAGTTGGCATAAAGTTTCTATCAAAATTAAGTCATTTTGAATATAAAAAAGAGATTTAAAGGGTAATGTCAATTCAATTCTAAGTGACACACAATCCTGAATCTTTTCAATCCGAGTTTCCATCCTATTTTACCAAGACACCAAATGTGTAGAAGGGAATAATTCCTTTGTTTCAACTGCACAACACAAGAAAAGAGAATGGGGGGTGTGAGAAAACATTTGATTGATGGAGTCATCTGGCCACGTTTAAGTTCCCAGTCTTTCTCTCAAGTCCTTTAATCTCTCCTCTCCTGTTTTTATTCCCGCGAAGCAAGTCTCGCCGTCTGGGCTGGCTGATGGGAAAATGGCGGCGGGTGAACAACTGGCATTTTCTGGGCAGCCCCAGCTGCTGGCATGACGTGGCGGTTCAGGGAAGCGTGCCCAGATACCGACCAGACCGTGAGCGCCCATTATGAGGAGCTGGCAGCCGCTATGACTTTGGCTGCACTCTCTCATGAAGGCGTATTTCAATATGCAACCCCAGGGGTCCACATTAACTAGATAGAGTGTCCAGCCACACGTAGGTTAGGTCGATGGTTTTCCCACCAGTCTCCAGGTTTTCTCCCCCACTGAGGAAAACTTGGCGCCCAAAAAAGCTGCAGTATATGAGCGTTGTTTATCTGCTCCAGTCCAATATGGGTCTAAGCGGCCAGCTTTTCCCCCCTTATTCACTTAGCTAGCACGGCTCTGTCAACATGAGCTATGCTTTCTGCAGCCTTGTAAATACCAAATAACTTTGTGCCATATCGAACCTGAACCCGTCTGGTATTACAGCCCAGCGATCTAAGGTAATAGATCCACGGCTACAAGTCTCAGCCATGTGCTTTTAAAGATATAAAGAGCACTTGGCCGGCCCCTATTAGATGACCCTGTTCTATTGCCAGCATTACTCAATAGACTTTATAGGATACTTGCTTCACTGGAACAATCTTTCACTCTTTGTGCTGTCTGCCTTGTGTTTCAG
Seq C2 exon
AGTGGCATGGCGCTGACCTATGACCCCACCGCAATGCAGAACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044574:ENSDART00000138388:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.861 A=NA C2=0.400
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]