DreINT0133541 @ danRer10
Intron Retention
Gene
ENSDARG00000099021 | setdb1b
Description
SET domain, bifurcated 1b [Source:ZFIN;Acc:ZDB-GENE-061013-224]
Coordinates
chr16:22104616-22105707:-
Coord C1 exon
chr16:22105475-22105707
Coord A exon
chr16:22104777-22105474
Coord C2 exon
chr16:22104616-22104776
Length
698 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
3' ss Seq
GTTTGTTTGCTTGCTTTAAGGTC
3' ss Score
8.75
Exon sequences
Seq C1 exon
TGCATGGAAGTGGATGCAGGTTTAAACTCAGGGATGGAGATGGAGCTGGAACCAGAGTTGGAGGAGGAGTTAGGAGTGTCTTTGGATGAGCTGCGCAAGTGGATCGAGGAGCAGGTGGACAGCAGCGAGGCTGTGCAGAAGAGGAAAGCTGATCTGGAGCAGCTGCAGGAGTGGGTTGAGCAGCGTGAGAAGGAGGTTGCTGATATCGATGCTCTTTGCTCCAATGCCTCAGA
Seq A exon
GTAAGTGTAAAGAGTTTATTTGATTTAAACCAAACTAATTTTTATTCATGTTCAGGTTTTTTTTTTTTTTTATAGGCAAAATAAACATTAATAATGCACAAATGTACAATGTGCCAGAAATATACAGGAAGCTATTTGCAACTATTACATTTTTAATTTAGTGTTGTTATGTTATGGAATGCTCTTTTATACATTATATGATGTGAATAACACGAGGCATGAATGCAATAGTCATGTGTGTATGCTTGCTTGCAGAAATTACATACCAACAAAAACAATGAAAATTTAGCACACTGGAGTACACCATTGAATCTATTACTATATATCTGATACTTTTTGTGTGCTTAATGGAGGAAATGTTTTAACAATCCACACTTGAAATATCGATTTAATATTGAATTTATAAAATTATGTCAACACTGGCTAAGAAATGGCAGGTTTGAATGTTGTGTTATTTAATATAGAGAATGTTATATCATGCTGTTACATTGACTGATTTAATGTAGAATAATCATGTAGTATACAAATTCTTTCATTATGTGGTAAGAACTTCTAAAAAGAAAACGATATGCTGAACGAAAGCACAGCCTCAGATCAGCAAGTGCAGATTTCTTATTAGTTGCTGTAGGTTTTGGTTTGAGTGAAATCCAGGTTTTGGAAGAAGTTCAATCTCTTTTTGTTTGTTTGCTTGCTTTAAG
Seq C2 exon
GTCTGTGGTTCAGTGTGAAGCTCTGGTGAAGGAAGTGTACAGTAACATGGGTTTAGTGTATCGTGAAAGCAGCTCAGATGATGAGGGAGGCAAGGCAAACCCTTCTGAGGTCATTGAGATCGATGATGATGATGACGATGATGTCATTGCTGTGGGATGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099021:ENSDART00000165824:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.299 A=NA C2=0.508
Domain overlap (PFAM):
C1:
PF135141=AAA_27=PU(76.3=96.1),PF051497=Flagellar_rod=PU(73.6=83.1),PF141821=YgaB=PU(83.1=76.6),PF092786=MerR-DNA-bind=WD(100=68.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATGGAAGTGGATGCAGGTT
R:
CCTCAGAAGGGTTTGCCTTGC
Band lengths:
342-1040
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]