DreINT0133567 @ danRer10
Intron Retention
Gene
ENSDARG00000022996 | setx
Description
senataxin [Source:ZFIN;Acc:ZDB-GENE-070402-1]
Coordinates
chr21:3804603-3807950:+
Coord C1 exon
chr21:3804603-3804698
Coord A exon
chr21:3804699-3807862
Coord C2 exon
chr21:3807863-3807950
Length
3164 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
TTATTTTATTTTTTTTTAAGATT
3' ss Score
8.72
Exon sequences
Seq C1 exon
GGTGGAAGTGGACACAGTCGATGGCTTTCAGGGTAGAGAAATGGACTGTATTATTGTGTCCTGTGTGAGAGCCAGCAGTGAAATGGGTTCCATTGG
Seq A exon
GTGAGTGTGTTTGTGTGTGTGTTTAAGTGTGCATGTGGCCTGTCTGTCATGGATGTTTCAAGGGTTCTCAGAAGTCATTGTTGGGTAAACCGCTATAGTGGTGAAAAATCAACTACTGATTGCATGACATTGCAACAGGAAATATTAAGTGCTTTTATTGCAAAAGATGAAAGCTGTTCAGGATAGATCACCCCAAAATTTTTAATACTCCGTAAAGCAGGCTAGGCGGAATAGCGCTATTCACTGATGTTTTGTTGTTAAACTAATTTCAACTTTATTAATGCTGTAAAATGTCCTTATGAAACTGAAAATGGTCATCAATCTTTCACCGGAAGATTTCAGTGGCTGAACCACACTTCTGTGCATATAACCCTTTCGTAAGACAACAATTTACATAAGCATTGCGTGGCTAAAATAGTTTAAAACAGAACATCACCCGTCTAAAAGAAATACTTCAGCCATGGTGTTATCCTTCCTTCAGCGTACAAAACTAACTCCAATATTGATTCAGGATTTCAACAAGTTTTGATTTGTTCAGGATCGATCATTTGCATTTGTTTTTACTGCTGTCACCCCCCCCCCCCCTCTCTCAATTCAATTCAATAATTGCTTTATTGGCATGACAAATATATTGCCAAAGCAGTTATAAAGTAACATATATAATAAAAACGGTACACACAGTAAATAGTAGTAGTAGTTAAAAAAATAATAATAAATAATAATAATTATTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAAGGGATGTAACGGTATTGTAAATACCGTCATACCGCAATATAAATTTTTTTCGATATTACCGAAGTCGCATAACTCGGTAAAACTATAGGTCTTCTGAGAAAATTTACTCAGGCGAATGAAGCGAACGGGAGGTAACGAAAACTACAATTGCCATCAGCCCATGCTTGACCATCATCCCTTGCGGTCTGTTGTTGCTACAGATCCAGTAATGCGGAAATGGAGTGTGCTGCTAGAAGCGGGAATGAAAAGAGCTGGAAAACTCTAGAGCAGGTCGCACACCAGAAGCGCCGCTCGGCGCCGCGACACGGCGCGTACATGACAGATTAAAGTATCGCACACCAGACGCGCACATTCGAATGATATTTAACATGAAACTAATCAGATGGCGCTCTGTGGCGCGGCTGAAAAATGAACTGCGTCCTGAGCCGTCGCCAGGCGCCGCCGACAGCCGCCGACTTGTGGCGCCGGTGTGTGTATCCTGATAGAAACCTATGTTTAGAATTCTAAAATGCGTGGCGCTGCGCGGCGCGCCGCCGAGCGTCGCTTCTGGTGTGCGACCTGCTTTACACGCACAGTTCAGTCCTGCATTATCTCCGTGTAAGTTCAGACTTCGCAAGTTTGATCAAGGCTGCAGTCTCTTCTTCTCAGTTTGATATGGAAAAGCAGATTATACCGAGGACACGGGTAAATCTTCAAAGGGAACAGTGTACTTTATAACTTCATTCACATCACCCTGGCTTCGTTGTTTCACTTTCTCAACAATAAAATGTAAACATGATTTAAGGAACTGCCTATTTTCATTTTAATATTAGCAACTTAGACAGCAGACATGTTGAGGCGTCGTGCTGCATAAGATGAGCGTCATCTTCACTGTCTGGATATTTATAACAAAACAGAGCCGATAACAACTGCCTCCTTTCAATTTCAGTGAAAATACGAAACACAGCCTCTCTTTTGCTGAGTATCAGTTTTAAGAATCGATAATGGCCATTTTAAAAGTATAACATACAATAAGTTTTTACATTATAGGAAATAAAGGCAAGCGATCAGTCAATATACAGAATGTACGTGGTTACATTAATCATTAACTTATCTTTGCGCTCAGCCAAAACACGTTACCTGAGAACAAGTAATAGATTCCAATGCCCAAAGTCAGGGAATATGTCATTAGATAAAGACAACAAGATAAATGAAATATCCCGTTTAATAAATATAGTGAGATTAGATCCAGCGGGAGATGCTTGATGAGAAGTCCGACTAGCAGAGCTCTCATCTGTGTAGATGGGCTGAGTGTGATTAAATGTTGAATGTGATGAGTTTTCAACAATACTAAATTGAAACTTTATTTTTTTACATGGTTTAATATTTTTTTGTTATTAAAATTGAAGTTCCTGTTTCAAAGCTTACAGATAGATGGCTAATTTGTATGTCATTGACACTTTTGGCACTTTTTTGGAGTATTTTCATAAGTTTTGTTTTTTCCTGTAAATGATTCAATAAATACCGTACCGTGACATTCATACCGAGGTATTACCGTACCGTGAAATTCTGATACCGTTACATCCCTAATATATATATATAATAAATAAAATATCAACAATACATAATATTCTATATATATATATATATATATATATCACATTAATATTCAATATATTCAACATATCATATTAATCATACAAATCAATACAAAAATAGATCAGAATAAACTGTACATTTTAACAATCAATATTTAAGGATAAAACGGTAATAAAAACAACAATAATAGTCAGTATATTTACAATGATTCATTTATAATCGTGTGTGTGTGTGTGTGTGTGTGTTTGCAGGCACATCACTGATGTTTTTATTAGTCTGCCCTCTCTTTTTGTGACAGGCATTAATGTGATGTGCCTCTAGAAGGACACACTCATTTTTTCCCATTGTAAATATTGAAGCTGTGTTTTGTCTCTCTCTCGCATGTCATGAACGTGCCGCGCTGTACATTTGTTGACACAGTTTGTGCTACTTTATTAGAATTATGGGAGTTGTCGGCTCGACAATATTTAATTGGATGAACATTTTTTTTTTGTTTTATGCCTTACCCAGAATATAAAAACACGCATAAATAGATTTAGATCATTTACTTTAATCATTACTATTGGACAGTGAAGAGACTTTCAACCAGCGCAACAAAACATGTTTCTGAAGACCTACTGCACCTTTTAATTTTTCAACAAGTTGAAATGATAGAAACGTGTCAAGTCTTGTTGCGTGACCTAATAAAATATTCATCTTTCCATTTCAAACATTGCTTTATACGTGCATGTCATTTATTTATTTTATTTTTTTTTAAG
Seq C2 exon
ATTTGTTGGAAATCGCCAGAGGATGAATGTAACAATCACCAGAGCCAAGTTTAGTCTCTTCATACTGGGACATCTACGCACACTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000022996:ENSDART00000149777:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF130871=AAA_12=FE(16.4=100)
A:
NA
C2:
PF130871=AAA_12=PD(13.3=86.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]