HsaINT0148414 @ hg38
Intron Retention
Gene
ENSG00000107290 | SETX
Description
senataxin [Source:HGNC Symbol;Acc:HGNC:445]
Coordinates
chr9:132269615-132271808:-
Coord C1 exon
chr9:132271710-132271808
Coord A exon
chr9:132269703-132271709
Coord C2 exon
chr9:132269615-132269702
Length
2007 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
ACTCTTTTTTTATTGCCTAGATT
3' ss Score
7.8
Exon sequences
Seq C1 exon
ACCAGCAGAAGTAGACACTGTGGATGCATTCCAGGGTCGGCAGAAGGATTGTGTTATTGTTACGTGTGTCAGAGCAAATAGCATCCAAGGTTCAATTGG
Seq A exon
GTGAGTTACTGTCATTGTTGCTCTTTTATACTTGTATACATTGTTGCTTGTTTATAGTTCAGGATTAGGTTCATTATCACTGTTAGAGAACACCATTTGCTTTTTTAATTTTCTTTTGTGAAAACCTGTGTAATACTATGAAAGTTTCTCTTTTAAGTTGTGAAATAGACCCACTGTTAGATCTTGGTGCAATCTTGGCCCACTGCATCCTCCACCTCCTGGGTTCAAGCGATTCTTCTGCATCAGCCTCCCGAGTAGCTGGGACTACAGGCATGTGCTACCACGCCCAGCTAATTTTTGTATTTTTCTGTAGAGACAGTGTTTTGCCAGGTTGCCCAGGCTGGTCTCAAACTCCTGAGCTCAAGTGCTCCACCCACTTTGGCCTCCCAAAATGCTGGGATTACAGGCGTGAGTCACTGCGCCCGGCCTTGGTGTCTTTTATATTAACCCATTTCATAGTGTGAATCTGTTCTTTTATTTAATAAGATTCAAATAAATAATTAGATTATACTTTGCAGAGGCATATTACTCCCCATGGTATGTGTCAAAGTGTCATTGTTTTCTGTGTTTTCCTGCTTTGGCTAAATTTGTTCACCTTAACTACTGTCAGTTTATTTAAGATGCTAAGGACACCTGTATGAGTGACAGAAAATATCCCAAGCCCAAGACTCTTACATGATTATTTGTTTCTTGTCATGAGAAGCAGACAGAATTTACAGGTTATAAATTAGTTCGTTTTCAAATAAAATAGTAATTAAAGTAATCTTTGCCCCTCCCTGGGATGGGCTGCATATACAGAGCCCAGTTGTATCTCAGGGTCAGTTTATAAATAGACCTTTCTTTCCCAGCTAATTTGAAATTTCACTTTTATCATACATCAATTCTATTTCTGAGCTCTTTTTCTGATCTACTGAAATATTTATCTGGTGTTCATGTATTTCTACACTAGTTCTACAATATCTTAACAGTCTAGATATATTTAAATGTAAGAATAAAGTGATTAGGCTGGTACCACATTTTTAGGATTTTTCAAGGCTTCAAGATTGCACTGTTAAAATTTCCAATTATCTTATCCAGGTAAAAATAGGAAATTGATAGATGCATCACTTTGAAGGAAGCCCCGAGGTTTTGGTTTGTTTCCTGTTTTTAATAGGAATTCTTCTGTGCCCGGTACCCTGTATTGGGACGGAGAGTAAGAAAGCACTGTGACTTCTAGAGGAGTGAAGGAGTCCCGGAAAAGCTGCCTGCAGTCCACCTGTGTCTCACATGGGCATGCTGAGTCATTCTAGAGTTCACCTGTGTCTCACTGGCATGCTGAGTCATTCTAGAGTCCATCTGTGTCTCACATGGGCATGCTGAGTCTAGAGTCCACCTGTGTCTCACACGGGCACGCTGAGTCATTCTAGAGTCTACCTGTGTCTCACATGGGCACGCTGAGTCATTCTAGAGTCCACCTGTGTCTCACATGGGCATACTGAGTCATTGTAGAGTCCACCTGTGTCTCACATGGGCACGCTGAGTCATTCTAGAGTCCACCTGTGTCTCACATGAGGATGCTGAGTCATTCTAGAGTCCACCTGTGTCTCACACGGGCACGCTGAGTCATTCTAGAGTCCACCTGTGTCTCACATGAGGATGCTGAGTCATTCTAGAGTCCACCTGTGTCTCACACGGGCACGCTGAGTCATTCTAGAGTCCACCTGTGTCTCACATGAGGATGCTGAGTCATTCTAGAGTCCACCTGTGTCTCACACGGGCACGCTGAGTCATTCTAGAGTCCACCTGTGTCTCACATGAGGATGCTGAGTCATTCTAGAATCCACCTGTGTCTCACACGGGCACGCTGAGTCATTCTAGAGTCCACCTGTGTCTCGGGCTCACTGAGTCATTCAAGATTCCACCTCTGTCAGACACGGGCACGTTGAGTCATTCTAGAGTCCACCTTTGTCTCACATGGGCATGTTAAGTCATTCTAGACAAAGAAGGAACTCTTTTTTTATTGCCTAG
Seq C2 exon
ATTCCTGGCAAGTTTGCAGAGATTGAATGTCACCATCACACGAGCCAAGTACAGCCTCTTCATCCTCGGACATTTGAGGACCCTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107290:ENST00000224140:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF130871=AAA_12=FE(16.3=100)
A:
NA
C2:
PF130871=AAA_12=PD(12.9=86.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains