GgaINT0124342 @ galGal3
Intron Retention
Gene
ENSGALG00000003661 | SETX
Description
NA
Coordinates
chr17:7123982-7126533:-
Coord C1 exon
chr17:7126435-7126533
Coord A exon
chr17:7124070-7126434
Coord C2 exon
chr17:7123982-7124069
Length
2365 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
CATTTTGTCATGTCTCCTAGGTT
3' ss Score
8.95
Exon sequences
Seq C1 exon
CCCAGGAGAAGTGGATACAGTGGATGCATTTCAGGGGCGAGAGAAAGATTGCATCATAGTGACATGTGTCCGGGCAAACAGCTCTAAAGGGTCAATTGG
Seq A exon
GTAAGTCCATCTCCAGTGATCTGCAAGTCTCATTTCCAGTAACACTCTAGATATTGTCACTGTATTTTTAACATTATCAGTAGAAAAGTTATTAGAGAGCAAGTCACCACAGCTAGCAAATGAAAAGCCATCTGCATGAATTGACATTAGTGGTTTGACATCCCCTCCAAAACAGAGTGTAGGAAATGCTAAGTATGTTCTGCATTATATGCTGATGAATGCACATGTCTGTTTTAGCCTGTCATTGTTTAGTTTTGGCGGGCTCCTTAGTGTACTGCAAGACTTTTCCTTTAGCTTTTACTCTGTATTGTGATTTAACATTTTTTGTCACTGTTGTTATATTATTAATACAGCATTCTATCTGTAAAAGCACTGTCAACTAGTTACGTAGTTTGGGAATGTCATGCAGAGCAGCTGTATCTTTGATTTGTAGAGCAACATGGCTAAGTTAATATGCAGAAAGTCTTGAATTAAGATTGCAGATTTGATAGTTTGTGTAGGTTTTTTTCCATTCTGAAACAGAAGGAACTGAATGCCAGGTGTACTGTTTGTCCCTCCAGACTGCTACGCAGTTGTTAATTTGCTTTAATTTACTTCAATAATAATCTCTGTAGCTTAGTGATAGCTTCAATTTAGAAATGGCAGTAGAAGTGTGCCACCTTCTAGTTCATTAGCTTTTAAATTAATCTATGGGAAGGCTGTTCACATAAACAGAAATCTTTGTCTCCACACACCAGGTTTCACTAAGCTGTTTATGCTTTTCTGGTACTAATTTCCTAATTGTTAACTTAAGGGCTTTTAATTGTGTTGACCTGTGCTGCTTTGGGAAGGATGGAAAACCCAAATTGTGTTTAAACAACGATGCTTTTTAAAGGTGTCTGAATCTAATTGATTAAGACTGGAAACTGAGGGCAGCCAGAACCTGCCAGTACTTCTGGCTGGCCTGGGCCATAACCTCCATCTGTTCTTTCAGAACAAAACTTTGCAACTTACTGTGCTGGAGATTTATGTAATAAAACTTTGGCAATGGTATGCCTTAAAAGCTATACGTACTGATGACTTGGACATCTCTGTTACAAAGTCAAGTGTCATTGGCAAGGTGTGATGGGAAAGTTTGCCATCACCATTACTGCTGATCTCTTAGCTGAGCAAAGTATTTTGGTCTCCAAGGTTGTTAGTCTAGCATTAAATTTACTCTGAAAGTACCTTGCAAAAGGAGGAGAAAACTCTCACAAGACCCGACAGGTGAAAGATGATGAGGTTTGTCTAAGGAAAGGAAAAAAATCCTTTAATTTTAAATGCTATTAAGAATGTGATATTCTTTCAAGACCACTTTTTGCTTCCCCAAGACCTGTAGATCCATATCACCTGTGCTGTTGGATCTGCTCCCCTGCCCATGTTCTTACCTCTGTCCTTTTTCATGCAGTGGCCAAATCCTCTGGTGTGGTTCTGTGACTTCTGCAGTCTTTACTTGCAGGTACTCTGGTACAGGTACACTGCTGTTCAGTGTCATCACCACAGTGTTAGGCACTGATGTTGGATCTATTCACATGAAGTTGTGTGGAAGCTTGTCTTTGTCTTTGAATTACAAACTTTGTTAGTACAGAAGAAGCTGTGCATTTTGGGAACTTTTTCATCAGAGGAGGAATATGGGTTTCATAACTGAGTGGTGTTTCTGTTTTTTTCCACTCCAAAGACTTCTTGAGGATTAATGTAAAGAAGCCCTAACAGAAATCAGTGTTCAAGAATACAGTTAACATTTATTTGTAGGTTGCAGCACCTTGGTTTGTGACCCCAGGGAGACAGGCTAGGTAATCTCATGCTTGCAACGTGAATATTTTCTTTTGCAAGGATTGTGTTTTTCAGATCTTGAAGCATGATAGAGCAAGTTTTCCTTCACATTCTGCCAGTGCAACCACCTTTAAAATAAAATGTTGAAGTCCAACATAGAGCATTTCAGTAGAAATTTTTTCCATTAATCATGCCAAATATTATTAATCTATTTCAGTTCAAGTCAAAAAGAAGCTTAAAGTCTTGATAGGTGAAGTGAGGTTGATGACTTCTGTACTTTGAAGAACATTTAAGGAAGCAGTAGTTGGCATTAAGAGGGGATTTGCACTAAGAAAGGAAACATCAATGGTAAGAGCTGGAAAGGACTGGAATTCCCTGCAAGGCATCAATGGAGAAAGAAGGAAAAGCAATTCACCTGAAGCCCTTCATGTAAAGGAGGGCTGCTGCAATGGCATCTGGGAGTGGGTCGGGCTGTTTCTGTTGTCTTCATTTCACTTTAGCTGAACATTTCCTTACCACTTCAGAGTCTTTTCCAAGAGGTAGTTTAGGAGCTTCATTTTGTCATGTCTCCTAG
Seq C2 exon
GTTTCTGGCAAGTCTTCAGCGTTTGAACGTTACAATTACCCGAGCCAGATTCAGCCTCTTCATCCTTGGAAGACTGAAAACACTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003661:ENSGALT00000005801:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.103 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF130871=AAA_12=FE(16.3=100)
A:
NA
C2:
PF130871=AAA_12=PD(12.9=86.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]