DreINT0134190 @ danRer10
Intron Retention
Gene
ENSDARG00000100083 | sgut1
Description
SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-041114-56]
Coordinates
chr1:27322874-27325511:+
Coord C1 exon
chr1:27322874-27323046
Coord A exon
chr1:27323047-27324932
Coord C2 exon
chr1:27324933-27325511
Length
1886 bp
Sequences
Splice sites
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
3' ss Seq
TTTTCTATTTTCTTCTACAGATG
3' ss Score
12.54
Exon sequences
Seq C1 exon
GCCAGTATCCATCGTCATCCCACTACACACGAAACTGGGACAAGTTAGTGGGAGAAATAAAGGAGGAGGAAAAGAAGGAAAATCTGGAGGGTGATGCTGCTCTCAACAAGCTTTTTCAACAGATCTATTCGGATGGCTCGGATGATGTCAGACGGGCAATGAACAAGTCTTTT
Seq A exon
GTAAGTACTGTAAGGATGTGTGTATAGATTTTCCTTCTGATCTTTGAAGTCATTTAGGTTGTATTATTAAATTGTATGGCATTTAGAACCGTAAAGTGAAAAAGAATTTCTACAACAAAATTAGAATAAACACTCTATTAACCTTTGTTTATTTAACATGATTCCAAAAGTTTGTGCTTCAAAGAGTGATAGTATGTTTAAGTCGTTCACAAAACAGCCCACATGGACTCAAAACTGTTTTTGTTATGACGTTGTTAGCAACAAGCCGCATGGTGTCTGATCTTTTCAATTGCTATTAAATCTGATAGGGATCTGACTACAGTGAATGATAGGAATTCGTGCAACTTTTACATGCATCCTCATTCTGCATTGGCACTTACTACAAACATCCTCTAACTCCTCAGTGGCTTTTCATTAACCTTTGAGTTTAACACACTGATGTCCTCAGTCTTGGTTGTTCCCTGGAGAGCATGATCACAGTGATCATTTTCGCATTATCAGCTGATAAATTTCACTGACGCTGTGCTGCATGTTTCGGGCTTGTCATGGATTACTACTTATCAGCTTTTTCTATCACATAACACTTATTTTAGCTTGCAAATGACGAAATGCAATACACTGCTGTCTGCGAAAACTGCAATAATAATCATTTACATTTTTTTTTTCACAATCACTTTATTCACATCATCACTGTGTGCTTTAGGAAATGATATGATATAAATGTCTAAGGCGTCGTTTACACTAATACGCTTTAATTTTTAAAACGCAAAAGTTTTGTTATGGTTATGTCATCTGTCTACACTACGCCAGAGTTTTCGAGCGCCGAATACAGAGCATTTTCGAAAGGCTGAAGAGATCATTTCGATTCTAAAACACTGCTGCTCCGTCTCAGTGTTGATGGGAGAAAAGAGGCGGGCTGCAGACATTTGCTGATTGGGGCTTTTTCCTTTATATTCAGTTGAGTTCAGAAACATAGTTCAGTCTTGCATCCTCTTTTTCTTTAAGTTCAGACCTCGCAAGTTTGATATGAAGAACAAACTCCTGGGGACACGATGGATAAATCTTCAAAGGGAACAGTGTACTTCATAACCTCATTCATAACACCCTGAATACCATGTTTCACTTTCTTAACAATAAAATGAAAACATGATATAAGGAACTGCCTATTTTCATTTTGATATTAGCAGCTTAACAGACACCAAAAATGTTGAAGCGTCATGTATCTGCGTATTTATATGACCGTCATCTTCACTGTATGCATATTTATAACAAAACGAAGCCTAAAACATCACTGCCTTCTTTCATTTTCATTGAAAATGTGAAACATATGCTCTTTTGCTGAATATCAGTTAGCATTAGCATTACTTTGGGATCTGCCAAGGGTCTGGAAGTGAAAAGGTTTAATGTCACTCAAACCTGGCCGGCTAGAGTTTTGCATGAATTCTTATTATTAAAAGCCCAACAAACATAAATTTCGGCTATGTGTTGTTGTTAATTTGTTACATTTTTGATTTTCACAGTACATAATTAGAAAGTTTAAGCTGTGTAAACCATGATCAGTTCACACTGGAAATGTTATATCGGCCATTTTTCAACAACGTGAAAAATTCATCTGAGAAAAGTTTTTTATTTGAGCACTAAGCCTCGCAGTGTGAACATAGCCTGAGCTACAGCAAAAATGACACCCTGCTTTTCAAGTTGTCAATTGAATTTCTATAAAACATATGGTGTCAAAGCAGCTTTAGATAAACAGGTAATAATAGAAAATCAAGTTCTAAGTCTTAGTGTGTACAGTTGCACAAAAATGCTGTATTTCCTTCTGCTGTCATAGACCTTTGGAAACTTTGGCTGTGATTTATTTATTTTTTTTCTATTTTCTTCTACAG
Seq C2 exon
ATGGAATCAGGAGGCACTGTCCTCAGCACCAACTGGATAGATGTTGGTAAACGGAAAGTAGAGATGAACCCGCCTGATGACGTAGAGTGGAAAAAATATTAAAATAGGTAGATGACATTGTCTAAACTACCATCACCAGTTTGTCCTTACCCACTTCTTCAGTTGGTCAGACTTCTTCCTTTGTCAGACCCAGAATAGTTCTGGAATAAAATGAGATTTTTAACTTTTCTCTCTCTAGAATTAGTTTGTGTTTAACTAAACTAGCCTATTACATTTTTAAAGCATCACACATTAAAACAAATCAGCAGCTAAACATCTGTACTGAAAGTCACTTTTGCCGCTGTTAGGTCTCCACCTGTATAACAACATCTGTTAATTTTGATCACTGTTTTTATGTACTTGTGCGTTCCTAAATATGCTTTTGACATGCTGTAAATAAATGTTTCTTTTTTTTCTTGCTCTGTGATTGGGGTGCCCTTGGTCTCTTATCAATCTTTTACATCTTGTAAAGAACTCTTGCATATTTTGAAGAAACTCTTTTTCATTCAGCAAAATAAATAAATCAATAAATGCGTTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100083:ENSDART00000166819:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.121 A=NA C2=0.121
Domain overlap (PFAM):
C1:
PF0500210=SGS=PU(58.5=82.8)
A:
NA
C2:
PF0500210=SGS=PD(39.0=94.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTCATCCCACTACACACGA
R:
TCTGGGTCTGACAAAGGAAGA
Band lengths:
356-2242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]