RnoINT0145871 @ rn6
Intron Retention
Gene
ENSRNOG00000012594 | Sugt1
Description
SGT1 homolog, MIS12 kinetochore complex assembly cochaperone [Source:RGD Symbol;Acc:1307550]
Coordinates
chr15:61910078-61914072:+
Coord C1 exon
chr15:61910078-61910259
Coord A exon
chr15:61910260-61913764
Coord C2 exon
chr15:61913765-61914072
Length
3505 bp
Sequences
Splice sites
5' ss Seq
TTTGTAAGA
5' ss Score
3.14
3' ss Seq
ATTTTTTCTTTTAATTCCAGATG
3' ss Score
9.69
Exon sequences
Seq C1 exon
ATGTAAAGAACATGTATCCCTCCTCGTCTCACTACACCAGGAACTGGGATAAACTGGTTGGTGAAATCAAAGAAGAAGAAAAGAACGAGAAGCTGGAAGGTGACGCAGCTTTAAACAAGTTATTTCAGCAGATCTACTCGGATGGTTCCGATGAAGTGAAACGCGCCATGAACAAGTCATTT
Seq A exon
GTAAGAATATGAAGTTTTCAAATATTTCTTCATTATGAGAGTGAATTTTAAAGTAAGAATAAATAGTGAGATTGAGGCCAAGCTGCATGACCTGGATAGCTGGAAGAGTGTTTGGTGGACTTGGCTGAGCATTTATTTTTTCTTGTTCTTCCAGACTTAGAGTGGTGGTTGAGAAGTGAGATGAGAAACAAGTGGCTTATTCTAACTCATTAGCGTTAGGAGTTGGATGACTAAGAAATACTAAGGTTAGGGCATTGGTGGGAATTTACTGTTTTGTTCAGTTTGTCACAGCAGTTCAATGAGCTCTCACTGTTTTATCTTCCAGAATCATACACAGATGTTTTCTTCTTTAAAATGAAGAACATAGAAGGGAAATTTCAAGAGTAGTATTGGGCTAGTAAAAAATGTCTAGTTTTCAGTGGCTTAATTAATTAAGAAATCAAGCCTCCACTTCTGAGGTTTTATTGATAACTCACCACTGTAAAACTGTGTAAATTGTTTATTTACACTTAAAAGCTTTGATCTGTGAGCTTGCTTTGTGCTCAGGTATGTATGTGTGTGCCTGAGAAGACGGATCTCAGGCAGTGGCTAGCTGCCTTGTGGGTGCTGGGAACTTAGCTCTTACTCTCTGTGGAGCCCCAGGCGGCCTTGAGCTCTCGGTCCTCCTGCTCCATTTCCCAAGCTCTCGTGTGCCACTCTAGCCTGCAGTCATTTTTCTTGAAAATGTAATCATGAACTTTACCAGGACTGTTGGCTACTCAAATCTTTCCAGGCTAGAGACTCATCTTTACTGTTGACTGTAAAGATGTGTGCTAGAGAGACCAGCCATATGTCAGGTCAAAGATGTGAGACAGAGTCTGCATCCATTTTCATATAGAAAATTGATAGTTAACCAAGTGATGTATATCCATAAAGCAAGCCATCTGTGTGGTAACGTTGACCTTAAATGCAGCTTGCTTTTGTCTCTGCGGGAAGGCAAACCAGATACCCTTTATTGTCCTTCAGTCTAACTGTGTGAGACCCAATGTTCCAAGCAATGATAAGAAGATGCTAAATTGCACGGTATTCCACCCTCTATAAGAGAGAAGGGAAAATTGTCATCAGCGAGTATGACCAGATTGTCAACTGAAGTCACTTTTGTGAGTTTTTTCACTGAGAGTCGTCTTAGGAGTAGCTTATTTTACAGACTCATCACATTTCATTCGGTGATTTTATGGGAAGCCTGCCGTGTGCCAGGCCACCATGATTAGGGCTACAGTGAGAGCACATCCAGCTTTCTACATGCATGGTTATGCATGGTTCTACAGCTGTGCGTCCAACTGACTTGTGATTTAAAAGTGTGTGTTTGTACTGAGTACCTGTTATACAGGCTTTCTTGTCATTCCACAAATAACACTGTATGACAGTAACTTGATATTTGCATAGCATTGGATATTATGGATCCTCTAGAGATGATCTGTGGCATAGTAGAAAGGTGTTTGTAGCGGCTGCAGATAGTATTGTATACGGAGGAAGGGATATGTCTGGACCCTCTGTAGATACCAAGCAATATTTATGTTGATAAAATATATAGTCCATGCCTTTGAAGAGGCCTCTTCTTTAGTTCTAGTCAAGAATGAGAATTAGACTTACAGAGGCAAACTCTTAGTAATGGTAATCTAGTACTTGGGATGCTGAGGTAGGAGAGTTCAAGTTCAAGGTCAGTCTGGGCTACATAGCAAGCCCCTGTCTTGAAAGCAATCGAGGAAAGGAAAGGAGTCCATCCTTAACCTGCCAGGGTGCAGTGCACATTAATGGTGGTTACGTAGAGGATAGGCTGTACTGGAGTCCATCCTGGCAGTTGAGTCTTAAGAAATTTGGCTGGCAAGGTGACTCAGTAGGTAAGGTGCTTGCTGCCAAACCTGATCATCTGAGTCTCAGGTCCTCTGTGGTGGAGGGAAAGAGCTGACTTCTACTAGTTGTCCTCTGACCCCTACATGTGTGCCATGACATGCCCAAGCCCATGCACATACGTACATGTACATACACTAAATGTAATTTAAAGTAAGAGCCCGCCAAAAGGTGCTGACATTCATGTTTGGAAGGCAAGTAAAGATCTAAAAGCTGGGATGGAGAATAGCACCCATGCAAAGGAATCCAGGGAAGTTTGAGAAGGCATTGGTTAGCTTGGGGTTCCAGTTCAAAAGGGTAAACAACTTCCTGTGTTTGTCAGAATGCAGCTAATTAAAAGATTGTAGGTTTCAGGAGTTCACATTATACTCTGCTGTGATCCGTGTCTGTGAATTTTTATCACAGCAAATGCATGGAAGCTCTATATCTGTAGAAGCATGAACCTTAGCCTTTAACAGCCGAGCTGGCTCTCCCTTCCATGTTTTTAATAATACAGTTAAGTATTGCTTAGCACTTGGCTGTGTTCTGAGAAATGTGTTGTCGGATGATTTTCATTTGTAGGTAACACCATCGGGTGTTTATACAAATCTGTACATACAGGTAGGTCACTCGAGGTGGCCTCTGTGTGTGTGCTGGGGAGAACCCAGGGTCTGCACATGCAAGGTTGTGCTTTCATGTTGACCCCACAGCCTGATGCGGCTCTTCCGTGTCATCAAGAGTTGTGAATAGAAGATGTTTGAGGCTATTGCAAGTGTAACATTATTTTACAGTAGATTTTTTAATAAGTGGAGAAGTATATTCTAAAATTGCAGTAAAAAAATTCAGCTTAGTACATACTGAAACTAATAGTATTTGTTGTCACATATTATGGGTTGTATTGTAATTGTATGAGCTATTCTTTTATGTGGCTAGTAGTTCAGTGAGTTTGATTACACCAGACACTAGAGTTACGTGCTGTATTAGGAATATTACCAATGGCTATAATATCACTAGGCGTCGTCAGCTGTGTGTTATAATCTTATGACATCGGTATCGTTAAATACAATTAATCATTGCCAAATCATTTCAATGCACTGTGTGGCTCCATGCACACAGTGAGATTGTGGTAGGGTGTGTATTCGCTCCATTATAACCAGGCCACATGTTGTTGACTTTATGTACCTCTATTGTGTGTGCCTTAATTAAATAAAGATTCAGAGCACACTAGAATATGCTTGGCAAAGAGGAAGCATTAAGTGCGGGTCCTTAAAGTTCTATTTAACTGGTATTTTACTGTCCTCAGCAAAATACAACTATGTCATTTTGGGGAGAAGGAATTTTATTTTCATTTGAAGGTGAAATTTCCACATGAGGCCCCTACTAATAGCAGAGTACACAGTCCTTAATATGGTGCATGATGTGCCCACCTAATTACTCTAGAATTGTCTTTTGTCATGTGTCTAACTCGTCAACCTCTCTGGAAAGCCTAAGATTAAATAAAAATGTTGAGTTTATATTGAATTTTTTTTTTAGTAGCCTATATTTGGGGGAGTATGTTTGATCCATTTTAAGAAAAATACTGTATTTTGATATACAATACAGGGATGAACCTTTTTATTTTTTCTTTTAATTCCAG
Seq C2 exon
ATGGAGTCTGGTGGTACAGTCTTGAGCACCAACTGGTCTGACGTAGGTAAAAGGAAAGTTGAAATCAACCCTCCTGATGATATGGAATGGAAACAGTACTAAATAAATCAGTTTGCTATCACTGTCTTACGTTTGTTCGAGTGCCCATTGTGTGCTTTATCACGTTCTTGAGTTTTAAGCAGTGTCTTTTGAAAGATTAAACAAACCTTTTTGCCTCTCTGTGCTTTAGAAATGATTTTCCTGCAAGTATTCTGAAGAGCGACAGTCACATCTTATCATTTCTGTCCGTAAGGATTTCACACACCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012594:ENSRNOT00000017086:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.139 A=NA C2=0.477
Domain overlap (PFAM):
C1:
PF0500210=SGS=PU(58.5=78.7)
A:
NA
C2:
PF0500210=SGS=PD(39.0=94.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]