GgaINT0106492 @ galGal4
Intron Retention
Gene
ENSGALG00000016946 | SUGT1
Description
suppressor of G2 allele of SKP1 homolog [Source:RefSeq peptide;Acc:NP_001025994]
Coordinates
chr1:165034517-165035788:-
Coord C1 exon
chr1:165035607-165035788
Coord A exon
chr1:165035058-165035606
Coord C2 exon
chr1:165034517-165035057
Length
549 bp
Sequences
Splice sites
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
3' ss Seq
AATGTTTTCTCATGTTGCAGATG
3' ss Score
10.24
Exon sequences
Seq C1 exon
ACACCCAGCACTTATATCCATCATCCTCTCACTATACAAGGAACTGGGACAAACTGGTAGTTGAAATCAAAGAAGAAGAAAAGAACGAGAAGCTAGAAGGAGATGCTGCTTTAAATAAACTCTTCCAGCAGATTTATTCAGATGGTACCGATGAAGTGAAACGTGCCATGAACAAATCGTTT
Seq A exon
GTAAGTCTTCACTCTTTCTCTCTAAAGAAATGTGTAACTTTTGCACAGTGTCACGTTGTACTGAGCTTTGCGTGCATCAGAAGGCTTCTGTTCAGCAAGACCCTGGGCCTGTCATAAATGGCACTGGTTCAGTGGGAGAGGTTGGTATAACAGGTCTCAGTGGAAGATGGTGCTTTGTTGTTGGTTTCTTTGTTTCGGTTACTGTTAGTAGAGGGAATATAGTTTTTTGGTTCCTAGGGAGCTTTTGTTGTTGCTCAGGATGAAAGAATCGAATTTCTTAGTTCTTTACAAGAATGTGAGTGACCCAATAAAAGCATCCTGTTAATTAACTTCTCATTATGTCCAACACTGACAACAAGTATTTTTAGGCTGAAGATTATGGACTGATGACTGTCAGACTTCATTCAACAAACGCACAAAATTCCTGTGTAAATTGCCCCTATATGAAGTTTAAATACTTCAGGTTCCTTCAGAGTTTGCAATCTGCTGTGACTTCTGTGTTACTAGAATTCCTGTAGCAAACTAAACAAATGTTTTCTCATGTTGCAG
Seq C2 exon
ATGGAGTCTGGGGGCACAGTTCTGAGCACCAACTGGTCAGATGTTGGTAAAAGGAAGGTAGAAGTAAATCCTCCTGATGATATGGAATGGAAGAAATACTAATCCTATTTTTAATCTTTCACCATCTGTGTTGCCATAGTCATGTACTGGCCACTGTATATGAACATAGCATTCTTGGATTCAAAGCACTGAAATGTTCCCTTGGAAACAGGAATTGTCTTTGCATTTTGCGTGCTTTACAGATTTCTTCATCTGCAGATGTTAAAGATGTATTCAAGAGTGGAATCCTGTTTTCATCACCTCTGTCAAGTTTTTGGAAATTGAGTCAAATGCAGTCTAAATTTTCTACCACCTTTATCAGCTCTGCTCTTTGGGGATGGGATGATCTCTAACGGGCTGTTAAGGATCATTGCCTTACGCCTGATATTTCTGTTCAATAACTTATTAGACCTTGGCAACTTTGGGTAAAAATACTTTACAACAACAATGTTAAAATTGTTTGCTCTTTAACTCTGCTAAATAAAACTGTAAATACAACTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016946:ENSGALT00000036497:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.066 A=NA C2=0.333
Domain overlap (PFAM):
C1:
PF0500210=SGS=PU(58.5=78.7)
A:
NA
C2:
PF0500210=SGS=PD(39.0=94.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGAACTGGGACAAACTGGT
R:
TCCAAGGGAACATTTCAGTGCT
Band lengths:
352-901
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]