MmuINT0154895 @ mm10
Intron Retention
Gene
ENSMUSG00000022024 | Sugt1
Description
SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:1915205]
Coordinates
chr14:79624841-79629755:+
Coord C1 exon
chr14:79624841-79625022
Coord A exon
chr14:79625023-79628851
Coord C2 exon
chr14:79628852-79629755
Length
3829 bp
Sequences
Splice sites
5' ss Seq
TTTGTAAGA
5' ss Score
3.14
3' ss Seq
TTTTTCTCTTTTAATTGCAGATG
3' ss Score
11.74
Exon sequences
Seq C1 exon
ATGTAAAGAACATGTATCCGTCCTCATCTCACTATACCCGGAACTGGGATAAGTTGGTTGGCGAAATCAAAGAAGAAGAAAAGAACGAGAAGCTGGAGGGCGACGCAGCTTTAAACAAGTTATTCCAGCAGATCTACTCAGACGGTTCCGATGAAGTGAAACGTGCCATGAACAAGTCATTT
Seq A exon
GTAAGAAAATATGAAGTTTTCAGATATTTTAAATATTTTAAAATTATGAGTGAATTTTAGATATCTAAAGTAAGAATAAATAGTGAGTTTGAGACCACATTGTGTGACCCGGATAGCTGGGAGAGTGTCTGGTAGACTTTGGTCTAGTGTTGATTTCTTCTTCTTCCAGACTGTAGAGTAGTGGTTGCAGAAATGAAATAAGAAACAAGTGCATTAGGAGTTGGATGGTTAAGAAATACTAAGATTGGGACATTGATGGGAACTTACTGTTTAGTTCAGCTCGTCACAGTAGCTCAATGGGTTCCCACTTCTTTAAAATGAAGAACTTAGGAGAGAGATTTCCAGAATCATATTGGGCTAGTAGAAAATGTCTGTCTAGTATTCAGTGGCTTAATTTATCAATTTATTAAGAAAATTTTGCTAGTGTAGCCTAAAGATCACCAGGTCTCCAGTTCTGAGGTTTTAGTGATAACTCATCACTGTAAAACTGTGTAAATTGTTTATTTACACTTAAAGATGTTATCTGCATGCTAGTTTTGCATGTATGTGTGGAGGTGAGAGGGGGGAATTGCAGGCAGTTGCTAGCTGTGCATGGGTGCTGGGAACTTAACGCCTCTGTAGTCCAGGCTGGCTTTGAATTTGCTGTGGAGCCATGGATGGCCTTGAGCTCTTGGTCCTCCTGCCTCCGTTTTCCAAGCTCCCGTGTGCTACTCTACCCAGCAATTATTTTTCTTGAAAATATAATCATGAACTTGACCAGGAAAAATATTATCTACTCAAATCTTTCCAGGCAAGAAACTCTTCCTTACTGTTGACTTTAAAAATGTGTGCTAGAGAGAATAGCTGTATGTCAGGTCAAAGATGTGATACAAAATCCACATCCATTTTCATATAGAAAATTGATAGTTAACTGAGTGATATATATCCATAAAGCAAGCCATCTGTGTGGTAATATTGACCTTAAATGCAGCTTGCTTCTGTCTCTGAGGGAAGACAAAACAGACTGCCCTTTATTGTCCTCCAGCCTAACTGAAGTAGTGAGGAGGAGATGCTAAATTGCGTTGTAAAGCGAGAAGGGAAAGTTGTCATCAGTGAATATGACCAGACTATCAACTAAAGTCACTTCTGTGAGTTTTATCACGGAGAGTCCTCTTAGGAGTAGCTTATTTTACAGACTTGTCACATTTCATTTAGTCATATTATTTGAAGCCTGCTGTGTGCCAGGCCACCATGATTAGGACTACAGTGAAGGTACATCCAGTTTCTTTGCATGGGTTCTACAGCTGTGAGTCCAACTGACTTGTGACTTGAAAGTGTCATGTTTGTACCGAGTACCTATTATACAGTCTTTCTTGTCATTCAACAAATAACACTATGTGACGGCAACCTGATATTTACATAGCATTGGATATTATGGGTACTCTAGAAATGATCTGTAGTATAGTGGTAAGGTGTGCCTAGGTTATATACAATTTATGAACCATGTTATATGAGGTTTGTAGCATCCACAGATAGTATTGTATATGAAGAAAGGGGTATGCCTAGACCCTCTGTAGATACCAAGTGATATTTATGTTGATAAAATATAGTCCATGCCTTTGATACTTTTTTAAAAAGATTTATTTATTTATTTATTTTATGCATATGAGTACACCACCATTGCTGTCTTCAGACACACCAGAAGAGGGCACTAGACCCCATTACAGATGGTTGTGAGCCACCATGTGGCTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCGGTGCTCTTAACTGCTGAGCCATCTCTCCAGCCCAGTCCATGCCTTTGAAGAGTTCTTTTTGTCTCTAGTCAATAATGAGAATTAGACTTACATAGGCAAAATTTTAAGTGGGTATAGTGGTAATCTAGCACTTGGGATGCTGAGACAGGAGAGTTGTGAGTTTAAGATAAGTCCGGGCTAAATAGCAAGACCCTATCTCAAAAGCAATCAAGTAAAGGAAAGGAAGCGATCCTTACATTGCAGAGGTGCCATGTATAGTAATGGTGGTCACATAGAAGATAGGTTGTATGGGAGTCCAGCCTAGTAATTAAAAGTCTGAGGGAACTTGACTGGCAAGGTGACTCAACAGGTAGGGTGCTTGCTGCCAAACCTGATCATCCGAGTTCAATCTTGGGTCCTCTGTGGTGGGAGGAAAGAGCTGATTTCTACTAGTTGTCCTCTGACCCCCCACATGTGTGCCATGGCATGCCCACGCCCGTGCACACATGTACATCTACATACACTAACTAGATGTAATCTAAAAATAAGTCGGAGCCCACCAAGACGTGCTGACCTTCGTGTTTGGAAGGTGAGTAAAGATGTAAAACTGGGATGGAGACTAGCTCCCCTTGCAGAGGAGTTCAGGGAGTTTGCAGATGGTGTTGGTGAGCTTGAGGTTCCAGTTCAAAAGGGTAAACAACTTCCTGTGTTTGTCAGAATGCAGCAAATTAAAAGATTGTAGTTTCAGGAATTCACATTATACTCTGCTATGTATGACCCATGTCCATGAATTTTTATCACAACAAATGCATGGAAATTTTATATCTTTAGAAGTGTGAACCTTAGCCTTTGACAGCTGAGCTGTCTCTCCCTTCCAAGTTTTTAATAATACAGTTATGCATTGCTTAACACTTGGCCGTGTTCTGAGAAATTTGTTGCTGGATGATTTTCACTACTGGGCAGCACCATTGAGTGTGCTTATACAAATCTGTGTAGTACAGTCGGTCACTTGATGTGCCCTGATTTGTGTGTGTTGCTGGGGATTCAATCCAGGCTTGCACATGCAAGACTTGTGCTTCCATGCTGACCTGTACCTACAGCTTGACGGATTCAGAGTCCATGTTACCAAGAGGTTTGGTGAATACAGGACATTTGAGGCTGCAAGTGTAAATAGAATATTCTTTTACAACAGACTTTTTTTTTTAATAAGTGGAGAAGTAATCTAAATTACTTAGTAATTAGTAAGTGAAGCTAAAATTCCAGTAAAAGAAGTTTAGCTGCAACTAATATTTGTTGCTACATATTGTATTGTCATCATCTGAGCCGTTGTTTTATACGGCTAGCAGGCCCCTGCGTTTGATTACATCAGCAGCCCCATAGACACTAGAGTTATGTGCTGGATTATGAACAGTATCAATGGCTACAATATCACTGGGCAGCCAGAAGTATTAAGCTGTGTCATCTTATGACATCAGTATTAAGTACAATTCATTATTGACCAAATCATTTTGATGCACTGTAGGGCTCCATGCACATAATAGGGTTGTTGGTAGGTTGTGTGTTCACTGCATTATAAGTAGATAACCAGGTCACATGTAGTTGACCACATGTCCCTCTGTTGTATGTGCCATAATTAAAAAGAAATTCAGAGTACATTAGAATATGCTTGGCAAAGAGGGAACATTAAGTGTGGGTCCTTAAAGTTCTATTTAACTGGTATTTTACTGTCTTCAGCAAAATAAGATCATGTCATTTGGGGGTGGATTTTATTTTCACTTGTAAGTCAATTTTCCACACAATGCATCTACTAATAGCAGAATACATGGTCCTTATATGGGAGTGCACACGATGTGCCTACCTACTTACTCTAGAATTGTCCTTTGTCAGCTGTCTTCAAACTTGCTAACCTCTCTGGAATGCCTAAGGTTAAATAAAAATGTTGAATTTATATTGAATTATTTTTAGTAGCCTACATATGGGAGAGTGTGTTTGATCCATTTTAAGAAAAATACTGTATTTTGATACACAATACAGGAATAAACCTTTTTTTGTTTTTTGTTTTTTTTTCTCTTTTAATTGCAG
Seq C2 exon
ATGGAGTCTGGTGGTACAGTCTTGAGTACCAACTGGTCTGATGTAGGTAAAAGGAAAGTTGAAATCAACCCTCCCGATGATATGGAATGGAAACAGTACTAAATAAATCAATTTGCTATCACTGTATTGCGTGTGTTCGAGAGAGCCCATTGTGTGCTTTATCATATTCTTGAGTTTTAAACAGTATCTTTTGAAAGATTAAACCTTCTTGCCTCTCTGTGCTTTAGAAATGATTTTTCCTGCAAGTATTCTAAAGAGTGACAATCACATCTTATCATTTCTGTCCTTAAGGATTTTGCACATCCTGAAACTGAATGAAATGCCAGTTGTTCCTAGATAGATCCGCTCTGTCTAGTTATGAAGTGGAGAAATCTTTAATAGCATCTTGGGTAATTGCCTTATTTTTGATGCAGTGTTCTGTCAATAATTGATTAGACCTGGCAACTTTGGTGGGTCTAACGTTTTCAGCTTCAGTGTTGTGTTTACTTTTCAGAGCTGCTTTGGAATGAGAGCTGTGCATTTCTCTGTGAAGGCTGCTGCTTTATTTACCTTCCTCTTAAGTTTTTCCTGGGAACTTTGAGAAATTGCTGCAGAGAATTCCCTCATTTAGTTTTTATGAGAAGTATTTGTAACTGCAGCAAGATTTTGGTTCTACCTTCTAAATTCTCGAATAAAGCATAGATTCTCGAGTTTACCAGCACACAGATGTAACTGTCAATAAGTAATCTGAGTTGGAGACCAAGAGAATGCCAGGCCTCCTCTGCCACCATTACTGTGGTTTCAGTACTTAAATGGAGAGAGATGCCCTTAGTTTCAGAGTGTATAGTATAGCAGAGAGAAGGCTGACATTCAGGAAAACTTAGGAATGGCTGAATGTTGGGCTACAGAATAGTTTTAACAAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022024:ENSMUST00000054908:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.290 A=NA C2=0.667
Domain overlap (PFAM):
C1:
PF0500210=SGS=PU(58.5=78.7)
A:
NA
C2:
PF0500210=SGS=PD(39.0=94.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types