DreINT0135080 @ danRer10
Intron Retention
Gene
ENSDARG00000063300 | si:ch1073-385i9.2
Description
si:ch1073-385i9.2 [Source:ZFIN;Acc:ZDB-GENE-131127-512]
Coordinates
chr16:52081357-52081776:-
Coord C1 exon
chr16:52081638-52081776
Coord A exon
chr16:52081547-52081637
Coord C2 exon
chr16:52081357-52081546
Length
91 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTC
5' ss Score
7.04
3' ss Seq
TTCTTGGTAATCGTCACTAGGGG
3' ss Score
4.53
Exon sequences
Seq C1 exon
ATAGGAGCAGGTGGTATGATCCCAATGCTGCTTATGATCCACGCTACAAAGCATACTATGATCAAATGTATGGATGGTATTATAACCAAGATGGTTACAGAGGAGGACAGGCGTATTACAACCAACAATATCAAAACAG
Seq A exon
GTACTCGCAGGCACTCATGCAATTCATCTTTTATTATTATTAATACTTTTAGTTTTTGCATATGAACACTTTTCTTGGTAATCGTCACTAG
Seq C2 exon
GGGAAGGGAAGGGTATGACGATCCATGGCGATATTACCCTGGTTATGACTCCAGCTTTGACGATGACTCTCGGAGACGTGACCCATATGCTGATGATTTTGACCGGCGTTCGGTTCACAGTGAACAATCAGCACACAGTGTGCATTCATCACACAGTCGACGTAGTAGCTTCAGCTCACGGTCACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063300:ENSDART00000092348:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCAGGTGGTATGATCCCA
R:
ATCGCCATGGATCGTCATACC
Band lengths:
168-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]