DreINT0152437 @ danRer10
Intron Retention
Gene
ENSDARG00000004246 | slit2
Description
slit homolog 2 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-010306-3]
Coordinates
chr1:23207192-23211956:+
Coord C1 exon
chr1:23207192-23207322
Coord A exon
chr1:23207323-23211801
Coord C2 exon
chr1:23211802-23211956
Length
4479 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAC
5' ss Score
7.29
3' ss Seq
CTTGTGCTCTTTTTTTTTAGTGT
3' ss Score
10.63
Exon sequences
Seq C1 exon
ATCGCCACAGATGAGGATAATGGAGTGTTGCTGTACAAAGGAGATAATGAACACATTGCTGTGGAGCTTTACAGAGGCCGACTGAGAGTCAGTTATGACTCTGGATCATATCCTCCATCTGCAATCTACAG
Seq A exon
GTACACACACATACTAGATATTGCAGATATTTAACAACAGTACTGAAACTGGGTGTCCGCGGGGTCTTAAAAAGTATTAAAAGTTGATAAATCAATTATGAGAAAATTAAGGCATTTAAAAGGTATTTAAAAAGTCTTAAAGGCATTTTTACAAGGTCTTAAATTTTGTTCAAGCATTGTCCAAAGTGTTTGACTCCAAAATAGCATAAATATATTTATATATCTCTCATAATATTAACATGCTCGATCCACGTGATTGGTTGGGGCGGGAGTGCATCCAGCCAAGATCCTCTGTCCGGGTGATGTTGCGTAATTTGTGGCAAACAATGGAAGGTGATATGACGCTCTCGTGTAGTGAAACTAGGGTTGCCACGTGTCCCTTAAAATACAGAATCGTCCTGTAATTGACAACAAAATTGTGCATCACATTTTGAATTAATAACGAGTTTTGTCCCGTATTTATCTTCTTTTTTTAAAGTAGCTTTTTATGCAAATCATCCCACACACATTTTATGAAGATGCCTTATTTCCTACTTTTGATTAGGTAATACTTGACGTCATTGTTAGTTTGATTGTTTTTTTTCTATTGAGGAAGGCGGGTCTTTTAAGTGGAGTCTGTCAAGTTTTGAGTGGCAGATGCTTCTTTAGGTAGCGACCTGCAGGCAAGTTTGTTATTTTATTTCCAATGGAGACATGCCAATGTCTCCATTGCCAATGCCAATGGCACATGAGGCAACAAACTTACACTTTTCCAGCTGCACCTAGTTAAGATCACAGGGAGCTTCTGTGATCGCGAGAAATGCAAACGGCTTAGGTTTAAGGTAGACGCAATGAAAAGTACACGTTTGCAAATCTACCAAACGGTACAAACAGCCATTCTGACTAGAGCAATAATGTGGAGAAAATTGATCTTTTGTTGAGCCCAATGAGACTTACATCTAAAAATAGAGCAAGGGTGTTCCTTTAGTGATATTGCTTTGACTCACAAGCTGAGAATGGCGGACGTGAAACAATAAACTAAGGATATGGTGACGCGCCTGTCAATCAACATTGGTGGGAGGGGGGACCGCACTCCTACGTCAAGTTGCAGTTGCTCTGACAAACGCTCCAACCAGTCCACTGTTTTATGTTGTTATATTGAAAAAAAAGGACTGTTTGTGTTTATATCACCCCAATATGACGGTCTATGTGCTATGCTTACACACATGTCTGTCCAAACAGCTTGAAAAGTAGATTTTTCACCATAGGTGTCCTTTAACTCTGGTGTACCACCCTATTAAACATAACATCAGCTATATCAGTGCTTCAGAGTTGTAAAAAAGAAAGACTGACAGCATCTGTTTTCACAGATTTCAATAAAAGACAGTTTATTTTATTGTCCAAGTTTTAACACATTAATGAAAACATATTTTAAGTTGCGATTTACCACCACTGCCATGCTATTGGGCCTGTGATTGGGGGTGTGGCCACTGCTGCAGTACAACTGTTTATTAAGCTAAAGGTTTAATTACTGATTAGAACTTGAAGTGGTGATGAGGTCCTAAAATATTCTGAGAAGGTCTTTAAAAAAGTCTTAAAAAGCAATTGAAATTAGGATTCTGACATATAGCCTGCAGGAAAAGAGCTTGTTTGTTTTAGAATAGGAAGAGATTTGTAAAGTGAGTGGACTTCAAACTAAAGTACATCAATTTACTATACATGGGATGAAAAAAGATGAAAATACACATTTAAACAGGTCAATGATATGAGCTGTAAATATATGCCTAAATTAAAAATAAAAATGCAACTATACTTGAATTTATCATCTGGAAAGCATTAGGTAGTCTTGTCATAGGCTATAGCAGGTGTGGGCAAACTTGATCCTGGAGGGCCAGTGTCCTGCATAGTTTAGTTCCAACCCTATTCAAACAGACCTCCCTAAGAGTTCAAGTGATTTTGAAGACGCTGATTAGTTTGTTCAGGTGTGTTTGACTAGTGTTGGAACAAAACTCTGCAGGGACACCGGCCCTCAAGGATCAAGTTTGCCCATCCCTGGGCTACAGTCTCAACCTTCCTGCAGATTTTCAGTTGCAACCCATATTAAACACACCTGTCTGTAATTATCAAGTGCTGTCCTAATTAATTGGTTCAGGTGTGTCTGGGTTGGAGCAGAACTCTACAGGAAAGTAGATGTTCAGGAACAGGGTTGAGAACCCCTGGCCTATAGTGTTGTGCTGGTTGAGGTCTTTTCAACAATATATGACATAAATGTTATTGTTTCAGGAAGAGACTGAACTGTACCTTTAGGCTGTTTTGTTTTGTATCTTCACCAAACATTAGTAAATCAACCTGCACTTCAAAGTTCAGTAACTATATATTTGAGTTAAAATTGAGTTAAACCCTAAAATAGCCTTTGTGACATCTGTACTGTCCTGTCACAAATAGCAGCACCAGTGGATATAGCAGGATCAGTGCATACCAGCAATTTATGCATCTCCAATATCCAATATCAAGAGAGTGACACCATAAGGTAACATAAGCTGCACACACTTGTCGTGGACACATCTCACAGCTCAAAGCATAACTTCTCATTTAAAGTAAACAGAAAGCTGCGATTTTTATGTTTTTACTACTGTGACGCATTTTCTAGAGAAACCGCATTGTAAATGAGCAAACTGTGGGCGTGGTTTGTTTTTTCTACCGCAGGTTGAATGGATGTAATAAAGTAGGCATTTTATTCAGAAAGGTCAGGTAAGGGGGTTTATAAGAGTTATTTTAACCTAACAGACTCCTCCTGCTCACCATTACTGTTTGTTGTCAAAACTGACAGATGGTGCAGCACTAGCCATGGCCATTACCTCAAAATCATGTAATCTGATAAACTAACTGAAAACAAACAGGAAGTGCATTTTCAGATTTCAATTAAAGATTAGAAGGGCAAACATTCATTCATTTTTTTTGGCTTAGGCCCTTGCCCCCTATTAGCCCCTTGACCCCTATATATCTGGGGTCACCACAGCTGAATGAACCGCCAACTTTTCCAGCATATGTTTTAGGCAGCGGATGCCCATCTAGCTACAACCCATCTTTGGGAACATCCATACACACTCATTCATACTCACACACTACAGACAATTTAGCCTACCCAATTCACTTGTACCGCATGTCTTCCAGAGGAAACGCACGCGAACGCGGAAAGAACATGCAAACTCCAAACAGAAACGCCAACTGACCCAGCGGAGGCTCAAACCAACAACCTTCTGGCTGTGGGGCAGCAGCACTATCTAATGCGTCACCGCGTCGGAAGGGCAAATAATTAATTTTTTTTTCTTAATGCCATGCAAAGATGAATTGTTCACCACAAAGCTGGCAATGCGAGCTAACAAAATCATATGTACAGTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGCGGTTACCATCTGTGGTGGAAAATTCATTTTATTCATCTCATATTCATTTAATATACTCATTTATATACATTATAAAGGTCTGTTCTTTTATTATTCCGTGTATGTACTGTTTAAGTTAGACCAAGTGTGACCACTTTAACACGATTTATCACCAGATAAGATATGGATTCATGCATGATGATTTTACAAGCTATTTGTTCGGGTAGGAGGTAAGTAGACTGAAATATAGATCAAAAGTGGGTAGGTTAAAAGTGCAAGTTGGTGCAAGTAGGTCAAAATTGATGTAACTGTGATTCATCCTGTATGTCACTAATGGCCTCGTGGTGCTCTAGATAAAAAGAGACCACATTCTGTTTTTGGTGTCGCACTCTGCAGAAACCTGCGTTGCTGTATGATTGTCTGACCTTTTTGCAAAAAATAAGTCTTCTGGAGCAGCATAGTAGACCACATATTTAGAGTAGGTTTTCTGGATTTTATTGAGATGTAAAATAGCACCAAGTAATCTTGAAATAATTTTCATGGAGTGGCATTATTTATATTCTGCTTCGCTAAAACTATAGGACTTCTGGTGTTGAAATGATGATGAGAATGCAGTGTTTTCCATCTGCATTTGATAGTGTTGAGATTATCAACCAAAAAGATCTAAATCTTTGGTATGGTGGGTGGAAACCGTGAGTAAAGGCCTTTGAAGTCTTTAATCTTGTCAAAAAAATATTACATTTCATATGAATGCTGTTATTTTGAACGTTCTATTCAACAAAGAATCCTAAAAGAAATCTAATCCATTTTCCAAAACCTGTATAAATGGCCTTTCACGTTGGATTATTGATCAACAGTACTATTGAAGTACCACTAGTACTATTGACCTCTGATATTAACAGTAGCAAAATCCTAAAAAAAAAAAAAAAAAAAAATTATTTTCTTTTCAGTAATGTGCTAATTTTCATCATCTCATCTAATCAAATAACCTTTTTGTGTTTTTAACTGTCTAACAGCTCACTTGTGCTCTTTTTTTTTAG
Seq C2 exon
TGTCGAGACAATAAATGATGGCAGCTTTCATGTAGTGGAGCTGGTGGCAAAGGATCAGTCTCTGTCACTGTCCATTGATGGAGGAAGCCCGAAATCCATCAACACTGCCAATAGCCCCAGCCCAGTGCCCAGCCCGGCCCCGCTTTATCTTGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004246:ENSDART00000007531:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.358
Domain overlap (PFAM):
C1:
PF0221019=Laminin_G_2=PU(33.3=97.7)
A:
NA
C2:
PF0221019=Laminin_G_2=FE(40.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]