DreINT0170687 @ danRer10
Intron Retention
Gene
ENSDARG00000013990 | ube2q2
Description
ubiquitin-conjugating enzyme E2Q family member 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1919]
Coordinates
chr25:29007313-29007587:-
Coord C1 exon
chr25:29007465-29007587
Coord A exon
chr25:29007370-29007464
Coord C2 exon
chr25:29007313-29007369
Length
95 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGTC
5' ss Score
5.64
3' ss Seq
TTTGTTCTTGTTCTTCCCAGCAT
3' ss Score
7.67
Exon sequences
Seq C1 exon
CTCTTACAGCAGCTGAAAAGGCTGATCTGTGATTTATGCCGACTCTATAACCTGCCCCAGCATCCTGATGTGGAGATGCTGGATCAGCCGCTTCCTGCTGGACCCATCAGTAATGATAAGAAG
Seq A exon
GTAGTCCAAATCAAAACAGGCACACACAGCCTTATTACACTCTTTCCTTTAAGGCATGCGAGCTGATGCAAGCGTTTTGTTCTTGTTCTTCCCAG
Seq C2 exon
CATGGAACAACAGACGAAGTGACATCAGAAGAAGAGGAGGAAGAGGAAATGGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013990:ENSDART00000155506:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.439 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0577317=RWD=PD(15.2=39.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTACAGCAGCTGAAAAGGCT
R:
TGCCATTTCCTCTTCCTCCTCT
Band lengths:
176-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]