GgaINT0026866 @ galGal3
Intron Retention
Gene
ENSGALG00000002989 | UBE2Q2
Description
NA
Coordinates
chr10:4462057-4463680:-
Coord C1 exon
chr10:4463576-4463680
Coord A exon
chr10:4462114-4463575
Coord C2 exon
chr10:4462057-4462113
Length
1462 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
ATCTCACTGTTACATTGCAGAAT
3' ss Score
8.07
Exon sequences
Seq C1 exon
CTTCTCCAGCAACTGAAGCGATTAATATGTGACCTCTGCAGATTGTATAATCTTCCTCAGCATCCAGATGTTGAAATGTTAGATCAGCCATTACCAGCTGGACAG
Seq A exon
GTAAGTTAAAGCTGTGGACGCCTTATAGAAATCAAGGAGTTGTTTTTTCAACTCTAAGAAAGACGACAGCGGAATGGTTAAAACTTTTGTGTGAGCCAGAACTTAGATGTGATGCAGTGTAGGCAGAGTTGCCAACCACTAGACCAGGCTGCCCAGTGCCACATCCAGCCTTGCCTTGAATGCCTCATACAGCAAAACACTGTATGCTGCTTCATGAAGAGTATACGTTTTACAGTGTGCACCTGAATTAATTTACTACTGATTCTTTCCTTCCTTTTCAGTCCCTTGCAAAGATATAGTATATCAGGACCATGTGCTGCTTTGGGCAGAAAGTATCTGCTTGAGGTGTCTGGTTTACTTCTTGTACACTTGACAAATTAAGAGCTGTGAAGAGCTGCTAAACGTTCTGGTTAACTAAAATGTTTTGTGCTGAAAACAGAACTGGTAACTGACAGTGAGCATGTTCTTTTTGTATTTTTAATAGGATTCTTATCTGCTTTTGCCTGTACGTGTTGATGACAATTTCTAAAGACTCTTTCAGTGTAACAGATGGTTTTCCTGTGGCGACCGTACTATAATAATGACAAATAACTTGCTTGATTTTTGGTCTTCTGCCAAACAGTAATACTATAGCTCTTCTCCCCTCGCCACCCACATAGCAGTGCAACTCCAAGGTCTGTAGGGTTAGGAAGCAGCTTCATTGAAGAGTCTTGTTTGTGCTCTGAAACTCTAAAATTAACTCATGGAAGAGTTTCACAGCTGGAAATTTTGGATAATTTTCAAGTTAAATAAGACGCTTTGATAAGTCAGAAGATCCATCCGGTACCTTGCATTGTGTACAGTAGGGGCATTCCTTACTTGTCAAAAAAAAGGGTAAGCAGAGGACAAGGATATAATGCTTCCAACTATTTCTGCAGCTCAAACTTCCTGAGCTTGAAGTGGTATCCTGAAATGGAAAGCTCTGAAAAACCAACTCAGTGTACTGCTTTAGTATGTCATCAGATAATGTAGTAACAGTGGCTATATAATGTTAGTGGTTGTGGCAGTAGTTCCAGGTAGTGTGACCAAGAACCATTAATTTATAGAGCTCTAGCATGTATATGCTTTCTAGTCAGAGCCATGATCTGATTTTCATGGTTTAAGATATCATGAGTTATAACCCACTTGTTTATTGTGTTTGTCACTGTTGTCTCAAAAATAGGATGTCTTTACCTGGATCTTAAGTTTTCATTTAGGATTTAATGTGAAGTTGTGGCATTCTATTTATCTTTCTTTCATGCAAATATTTCTTCGTTGTCATGTTCCAGGACAGCATCTTTGTTTATCCTTGCATTTGAACTTCAATCTTTGGTAGACCTTGATAAGTGTAACGTTCATATTTACTGTTTGCTAGAAGGCTTCCTGATTTTTGAAAGAAAGGAACGTGTGCATTTAATGCAGTTATCTCACTGTTACATTGCAG
Seq C2 exon
AATGGAACAACGGAAGAAGTTACATCGGAGGAGGAGGAGGAGGAAGATATGGGTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002989:ENSGALT00000004731:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.359 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]