DreINT0177964 @ danRer10
Intron Retention
Gene
ENSDARG00000074453 | zfx
Description
zinc finger protein, X-linked [Source:ZFIN;Acc:ZDB-GENE-061220-2]
Coordinates
chr24:16866449-16867507:+
Coord C1 exon
chr24:16866449-16866790
Coord A exon
chr24:16866791-16867354
Coord C2 exon
chr24:16867355-16867507
Length
564 bp
Sequences
Splice sites
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
3' ss Seq
TAACACTCACTTGCTTTCAGTGG
3' ss Score
5.74
Exon sequences
Seq C1 exon
AGTGTGATGGAGAAGAAGACGAGGTGGTGGTGGAGCTGCAGGAGTCAGTGCTGGTGTCTGATGTGGAGGGTGAGAAGATCGCGGTGCACGGTCTCACTCATGAGGAGCTGGTCATCCAGGAGGCCATCGAGGATGTGGTGGCGGAGTATGTGCCTTGCACTGATGAAGAGGACGATGTTGATGATGACGATGATGAAGGGCTTGGCACCATTGCCGTGGAGACCTGTGTGATGTCACCTGATGATGTGGCTCTGGAGGATGAAGGGCTGCAGGTGGATGTGGTGACCGACGCTCAGGTACAAGAGGATCCAGACACCTGCGGAGACTATCTGATGATCTCCT
Seq A exon
GTGAGTGAGATTGTAGCGAAAATGATCTGTAAATATTTGCTAGCCCTCAAGTGGTTCTGAATTCATCTGAGTTTTTTTCTTCTTCTCTTGAACACAGAAAGAATGTTATAGCCGTTAGCTCTGTTTCCATTCACCTATATTTATGCACATTTCAGGATGTCACATTAAAAAAGCTTCATGGAAATGGAAAAATGTGCAAAAATGTTGAAAATGCAATGAGCATAAACAACTGATGCGCACAACTCTGTTTGATAAACCTTTTTATCCTATAAGAAAAAGCATGCACATGTAAACTGAATCAATTCCAACACGCACATCAAAAAAGTCTTGTGATTTATTTTTTTCTCCAGGCCATGCTGTATAATTGGTGTGATGGTGTCTTTATTCAATAATGTTTCATGTGATATTCCATTTCCATTTCATGTGAAATCTAATTTGGATCTTTGCATGGAAACATGGCTATTGACATCAAAACCAGGAAAAATAATACTATGGAAGATAATGGCTGCTGCTTTCCAAAATATGGATTACATTTTCCATAATCTAACACTCACTTGCTTTCAG
Seq C2 exon
TGGATGAAGCTGGAAAGGTGGTGTCTGATGAAGATGCTAAGGTCACCATTGAGGGCACTTTAGAGGATTCAGAAGATGTGGAGAAGGATGATGATGGTCAAGAGGTCATCAAAGTGTACATCATCAAGGCTCACCCAGGGGAGGATGACTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074453:ENSDART00000149149:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.560 A=NA C2=0.481
Domain overlap (PFAM):
C1:
PF047048=Zfx_Zfy_act=PU(37.4=99.1)
A:
NA
C2:
PF047048=Zfx_Zfy_act=FE(16.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTGGTGTCTGATGTGGAG
R:
GCCCTCAATGGTGACCTTAGC
Band lengths:
351-915
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]