GgaALTA0000730-2/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000001645 | KCNT1
Description
NA
Coordinates
chr17:8915486-8916759:-
Coord C1 exon
chr17:8916521-8916759
Coord A exon
chr17:8915697-8915702
Coord C2 exon
chr17:8915486-8915696
Length
6 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
CTTCCCCCCACCGCGTCCAGGTA
3' ss Score
8.34
Exon sequences
Seq C1 exon
ATACGGCGTCTGCCTGATCGGCATCCGCAGGGAGGAGAACAAGAGCATCCTGCTGAACCCCGGCCCGCGGCACATCATGGCTGCGTCCGACACCTGCTTCTACATCAACATCACCAAGGAGGAGAACTCTGCCTTCATCTTCAAGCAGGCAGAGAAGCAGAAGAAGAAGGGCTTTGCAGGCAGGGGCACCTATGACGGCCCTTCCCGCCTGCCCGTGCACAGCATCATCGCCAGCATGG
Seq A exon
GTACAG
Seq C2 exon
TGGCCATGGACCTGCAGAACACTGAGTGCCGCCCCACCAACAGCAGCAAGCTGGCGCTGCCAGCAGAGAACGGCTCAGGCAACCGCCGGCCCAGCATCGCGCCTGTGCTCGAGCTGGCTGACACCTCATCCCTGCTGCCCTGCGACCTGCTCAGCGACCAGTCAGAGGATGAGATGACACAGTCAGACGAGGAGGGCTCAGCAGTGGTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001645-19-20,19-19-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=NA C2=0.452
Domain overlap (PFAM):
C1:
PF0349313=BK_channel_a=PD(8.5=11.1)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAAGAAGGGCTTTGCAGGC
R:
CACTCAGTGTTCTGCAGGTCC
Band lengths:
107-113
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]