GgaALTA0002477-1/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000004844 | SEMA6D
Description
NA
Coordinates
chr10:11371849-11372856:+
Coord C1 exon
chr10:11371849-11371926
Coord A exon
NA
Coord C2 exon
chr10:11372795-11372856
Length
0 bp
Sequences
Splice sites
5' ss Seq
GCCGTAAGT
5' ss Score
10.11
3' ss Seq
TTTGTTTCATACAACCACAGCAC
3' ss Score
4.85
Exon sequences
Seq C1 exon
GGCATGTATTGCTTCTCGGGATCCATACTGTGGCTGGTTAGACCACGAGGAGTGTGGGAGAGTGACGCCAGGCATGCC
Seq A exon
NA
Seq C2 exon
CACTGGAGGATATGTACAAGATGTAGAATATGGCAACACAGCGCAGCTTGGGGACTGCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004844-17-20,17-18-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0143720=PSI=FE(42.6=100)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTTCTCGGGATCCATACTGT
R:
TGCGCTGTGTTGCCATATTCT
Band lengths:
114-144
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]