GgaALTA0005127-3/3 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000009722 | DYNC1I1
Description
dynein, cytoplasmic 1, intermediate chain 1 [Source:HGNC Symbol;Acc:HGNC:2963]
Coordinates
chr2:24087892-24090805:+
Coord C1 exon
chr2:24087892-24088006
Coord A exon
chr2:24090664-24090747
Coord C2 exon
chr2:24090748-24090805
Length
84 bp
Sequences
Splice sites
5' ss Seq
TAGGTATTT
5' ss Score
5.39
3' ss Seq
CTGACACTGCTCTTCATCAGTGC
3' ss Score
5.03
Exon sequences
Seq C1 exon
GCTGATCTACAGCAAAAGAAGGAGCCAGCTCAAGAAGATTCTGACCTAGACCGCAAGAGAAGAGAGACAGAAGCTTTGTTGCAGAGCATTGGCATATCCCCAGAACCACCTCTAG
Seq A exon
TGCAGTCGCTGCATGTGTTAACATGGGATACCTGTTATTTTCATTATTTAGTCCCAACCCCTATGTCTCCCTCTTCGAAATCAG
Seq C2 exon
TGAGCACACCCAGTGATGCAGGCAGCCAGGACTCTGGAGATCTGGGACCCATAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009722-1-4,1-3,1-2-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0076914=ERM=FE(27.3=100)
A:
NA
C2:
PF0076914=ERM=FE(21.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTACAGCAAAAGAAGGAGCCA
R:
TTCCTATGGGTCCCAGATCTCC
Band lengths:
167-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]