HsaALTA0002702-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000158560 | DYNC1I1
Description
dynein, cytoplasmic 1, intermediate chain 1 [Source:HGNC Symbol;Acc:2963]
Coordinates
chr7:95439704-95442591:+
Coord C1 exon
chr7:95439704-95439818
Coord A exon
chr7:95442508-95442558
Coord C2 exon
chr7:95442559-95442591
Length
51 bp
Sequences
Splice sites
5' ss Seq
TAGGTACTT
5' ss Score
5.6
3' ss Seq
CTGACACTGCTCTTCACCAGTGC
3' ss Score
5.67
Exon sequences
Seq C1 exon
GCTGATATGCAGCAGAAGAAAGAACCCGTTCAGGACGACTCTGATCTGGATCGCAAACGACGAGAGACAGAGGCTTTGCTGCAAAGCATTGGTATCTCACCGGAGCCGCCTCTAG
Seq A exon
TGCAGCCGCTGCATTTTTTAACATGGGATACCTGTTATTTTCATTATTTAG
Seq C2 exon
TCCCAACCCCTATGTCTCCCTCCTCGAAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000158560-5-6,5-5-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.971 A=NA C2=0.855
Domain overlap (PFAM):
C1:
PF0076914=ERM=FE(35.2=100),PF0099215=Troponin=PD(42.2=69.2)
A:
NA
C2:
PF115403=Dynein_IC2=PU(0.1=0.0)
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGCAGAAGAAAGAACCCG
R:
AGGAGGGAGACATAGGGGTTG
Band lengths:
132-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)