RnoALTA0012937-4/4 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000009700 | Dync1i1
Description
dynein cytoplasmic 1 intermediate chain 1 [Source:RGD Symbol;Acc:2512]
Coordinates
chr4:30851040-30853848:+
Coord C1 exon
chr4:30851040-30851154
Coord A exon
chr4:30853713-30853796
Coord C2 exon
chr4:30853797-30853848
Length
84 bp
Sequences
Splice sites
5' ss Seq
TAGGTACTT
5' ss Score
5.6
3' ss Seq
CTGACACTGCTCTTCCCCAGTGC
3' ss Score
7.42
Exon sequences
Seq C1 exon
GCAGATATGCAGCAGAAGAAAGAGCCCGTTCCAGATGACTCCGATCTGGACCGCAAACGACGAGAGACAGAAGCTTTGCTTCAGAGCATCGGCATATCGCCGGAGCCCCCTCTAG
Seq A exon
TGCAGCCGCTGCATTTTTTAACATGGGATACCTGTTATTTTCATTATTTAGTCCCAACCCCTATGTCTCCCTCTTCGAAATCAG
Seq C2 exon
TGAGCACTCCCAGTGAAGCTGGAAGCCAAGACGATCTGGGGCCATTAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009700-6-7,6-6,6-5,6-4-4/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.846 A=NA C2=0.565
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGATATGCAGCAGAAGAAAGA
R:
CTTGTTAATGGCCCCAGATCGT
Band lengths:
167-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]