BtaALTA0009941-3/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000027134 | DYNC1I1
Description
Bos taurus dynein, cytoplasmic 1, intermediate chain 1 (DYNC1I1), mRNA. [Source:RefSeq mRNA;Acc:NM_001046516]
Coordinates
chr4:12998316-13001257:+
Coord C1 exon
chr4:12998316-12998430
Coord A exon
chr4:13001116-13001199
Coord C2 exon
chr4:13001200-13001257
Length
84 bp
Sequences
Splice sites
5' ss Seq
TAGGTACTT
5' ss Score
5.6
3' ss Seq
TCTGACACTGCTCTTCCCAGTGC
3' ss Score
5.86
Exon sequences
Seq C1 exon
GCTGACATGCAGCAGAAGAAAGAACCCGTTCCAGATGACTCTGACCTGGATCGCAAACGCCGAGAGACGGAGGCCCTGCTGCAAAGCATCGGGATCTCGCCAGAGCCCCCTCTAG
Seq A exon
TGCAGCCGCTGCATTTTTTAACATGGGATACCTGTTATTTTCATTATTTAGTCCCAACCCCTATGTCTCCCTCCTCGAAATCAG
Seq C2 exon
TGAGCACTCCCAGTGAAGCTGGAAGCCAAGACTCAGGCGACCTGGGACCGTTGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000027134-9-4,9-3,9-2-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF115403=Dynein_IC2=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCAGCAGAAGAAAGAACCCG
R:
CTTGTCAACGGTCCCAGGTC
Band lengths:
167-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development