MmuALTA0005945-4/4 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000029757 | Dync1i1
Description
dynein cytoplasmic 1 intermediate chain 1 [Source:MGI Symbol;Acc:MGI:107743]
Coordinates
chr6:5767030-5769791:+
Coord C1 exon
chr6:5767030-5767144
Coord A exon
chr6:5769650-5769733
Coord C2 exon
chr6:5769734-5769791
Length
84 bp
Sequences
Splice sites
5' ss Seq
TAGGTACTT
5' ss Score
5.6
3' ss Seq
CTGACACTGCTCTTCCCCAGTGC
3' ss Score
7.42
Exon sequences
Seq C1 exon
GCAGATATGCAGCAAAAGAAAGAGCCCGTTCAAGATGACTCCGATCTGGATCGCAAACGACGGGAGACAGAAGCTTTGCTTCAGAGCATTGGCATATCACCGGAGCCCCCTCTAG
Seq A exon
TGCAGCCGTTGCATTTTTTAACATGGGATACCTGTTATTTTCATTATTTAGTCCCAACCCCTATGTCTCCCTCTTCGAAATCAG
Seq C2 exon
TGAGCACTCCCAGTGATGCTGGAAGCCAAGACTCGGGCGATCTGGGGCCATTAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029757-11-10,11-9,11-8,11-7-4/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.956 A=NA C2=0.817
Domain overlap (PFAM):
C1:
PF0099215=Troponin=FE(8.7=100)
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGCAGCAAAAGAAAGAGCCC
R:
TTGTTAATGGCCCCAGATCGC
Band lengths:
167-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types