GgaALTA0006585-3/3 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000012526 | PRPF40A
Description
NA
Coordinates
chr7:37183686-37184052:-
Coord C1 exon
chr7:37183938-37184052
Coord A exon
chr7:37183769-37183789
Coord C2 exon
chr7:37183686-37183768
Length
21 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
3' ss Seq
CTAGCTTTTGACTTATCTAGTTT
3' ss Score
4.77
Exon sequences
Seq C1 exon
ATATTTTTAGATGAACTGCACGAGCACGGACAGTTACATTCGATGTCCTCTTGGATGGAGTTGTACCCAACCATAAGCTCTGACATCAGATTCACTAATATGCTTGGTCAGCCTG
Seq A exon
TTTCTTCATCAGGATCAACAG
Seq C2 exon
CACTTGATCTCTTCAAGTTCTATGTTGAAGACTTAAAAGCACGTTACCATGATGAGAAGAAGATCATAAAAGATATCCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012526-23-30,23-29,23-28-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0184614=FF=FE(67.9=100)
A:
NA
C2:
PF0184614=FF=PD(17.9=32.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTTGGATGGAGTTGTACCC
R:
TGGTAACGTGCTTTTAAGTCTTCA
Band lengths:
118-139
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]