GgaALTA1028322-1/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000006060 | SCN8A
Description
sodium channel, voltage gated, type VIII alpha subunit [Source:HGNC Symbol;Acc:HGNC:10596]
Coordinates
chrLGE22C19W28_E50C23:107202-108627:-
Coord C1 exon
chrLGE22C19W28_E50C23:108509-108627
Coord A exon
NA
Coord C2 exon
chrLGE22C19W28_E50C23:107202-107289
Length
0 bp
Sequences
Splice sites
5' ss Seq
TTCATATCC
5' ss Score
-14.87
3' ss Seq
TCCTTGACTTTGTTCCACAGTAT
3' ss Score
8
Exon sequences
Seq C1 exon
ACCTTTGTAGTACTAAACAGAGGGAAAACACTCTTCCGATTTAGTGCCACACCTGCCTTGTACATTTTAAGTCCTTTTAATCTGTTTAGAAGAATAGCTATTAAAATTTTGATACATTC
Seq A exon
NA
Seq C2 exon
TATTTAGCATGATCATTATGTGCACTATTTTGACCAACTGTGTATTCATGACTTTTAGTAACCCACCTGAATGGTCGAAGAATGTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006060-4-3,4-2-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0052026=Ion_trans=PU(0.8=6.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTAGTGCCACACCTGCCTTG
R:
AGTGCACATAATGATCATGCTAAA
Band lengths:
106-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]