GgaEX0000331 @ galGal3
Exon Skipping
Gene
ENSGALG00000000379 | F1NS08_CHICK
Description
NA
Coordinates
chr27:2222315-2224766:+
Coord C1 exon
chr27:2222315-2222434
Coord A exon
chr27:2223048-2223214
Coord C2 exon
chr27:2223878-2224766
Length
167 bp
Sequences
Splice sites
3' ss Seq
GTGCCCTTCTATCCCACCAGAGT
3' ss Score
8.84
5' ss Seq
ACGGTAAGG
5' ss Score
10.38
Exon sequences
Seq C1 exon
GTGACAGGGGCAAGGATGCTGTGAACTGCACCTACAAGGATGAGAATGACTGCGTGGTGCGCTTCCAGTACTACGAGGACTCCAGTGGCAAATCCATCCTCTATGTCATAGAGGAGCCAG
Seq A exon
AGTGCCCGAAGGGGCCAGACATCCTGGTGGTGCTGCTCTCAGTGATGGGTGCCATCCTGCTCATCGGCCTGGCTGCCCTGCTCATCTGGAAACTCCTCATCACCATCCACGACCGCCGGGAGTTCGCCCGCTTCGAGGAGGAGAAGGCCAGGGCCAAGTGGGACACG
Seq C2 exon
GGCAACAACCCATTATACAAAGAGGCAACCTCAACCTTCACCAACATCACATACCGTGGGAACATGTAGGATGCTGCACCCGCCGCTGGCTGTGGGATCAGCCCAGCACTGTGGGATCTCCTGGAGTCCAGTTTACAGAAGAGCTTGTGTGTGTGTCTGTGTGAGTGTCTGCGTGTAATTTAACAACCCCTTGGCTGTCTCCGGCCCCGCTGTCCATCACCTCACTGTACTGCAGGGATGTGCTTCCACAGCAAACCTCTCATCCTTACCTCGGTGGGCCAGCGGCCCCTCCATACACTGAACGTGGTGACATGGGCCATTCTGCCTTGGAGAGACTGTGAACTGCGAGGTGCTCATTGGGCTGAGGGGGTTTGGGTAGAACTCAAGGCTGTGAGCTGTGTTCTCCTGCATGGCCTGTGCTGGAGAAACCCACTGAACAGCTGCAGCCCCCGTGTTGCCTTATGGGTTGAGGGCACACAAGCAAACCAGACAACCCTCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000379_MULTIEX2-5/6=4-6
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF079657=Integrin_B_tail=FE(47.1=100)
A:
PF079657=Integrin_B_tail=PD(7.1=10.7),PF087256=Integrin_b_cyt=PU(53.2=44.6)
C2:
PF087256=Integrin_b_cyt=PD(42.6=87.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTGCGCTTCCAGTACTAC
R:
CACGCAGACACTCACACAGAC
Band lengths:
242-409
Functional annotations
There are 5 annotated functions for this event
PMID: 12535520
Partially encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: . ELM ID: ELMI001559; ELM sequence: TANNPLYK; Overlap: PARTIAL_RIGHT
PMID: 12606711
Partially encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: alanine scanning, surface plasmon resonance. ELM ID: ELMI001539; ELM sequence: TANNPLY; Overlap: PARTIAL_RIGHT
PMID: 18156175
Partially encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: . ELM ID: ELMI001539; ELM sequence: TANNPLY; Overlap: PARTIAL_RIGHT
PMID: 18156175
Partially encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: . ELM ID: ELMI001559; ELM sequence: TANNPLYK; Overlap: PARTIAL_RIGHT
PMID: 20739287
Partially encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: . ELM ID: ELMI001539; ELM sequence: TANNPLY; Overlap: PARTIAL_RIGHT
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]