HsaEX6023258 @ hg19
Exon Skipping
Gene
ENSG00000056345 | ITGB3
Description
NA
Coordinates
chr17:45380087-45390077:+
Coord C1 exon
chr17:45380087-45380206
Coord A exon
chr17:45384837-45385003
Coord C2 exon
chr17:45387505-45390077
Length
167 bp
Sequences
Splice sites
3' ss Seq
TCTGTGCTTCTTCCTCACAGAGT
3' ss Score
10.41
5' ss Seq
ACAGTAAGA
5' ss Score
5.96
Exon sequences
Seq C1 exon
AGGACACTGGCAAGGATGCAGTGAATTGTACCTATAAGAATGAGGATGACTGTGTCGTCAGATTCCAGTACTATGAAGATTCTAGTGGAAAGTCCATCCTGTATGTGGTAGAAGAGCCAG
Seq A exon
AGTGTCCCAAGGGCCCTGACATCCTGGTGGTCCTGCTCTCAGTGATGGGGGCCATTCTGCTCATTGGCCTTGCCGCCCTGCTCATCTGGAAACTCCTCATCACCATCCACGACCGAAAAGAATTCGCTAAATTTGAGGAAGAACGCGCCAGAGCAAAATGGGACACA
Seq C2 exon
GCCAACAACCCACTGTATAAAGAGGCCACGTCTACCTTCACCAATATCACGTACCGGGGCACTTAATGATAAGCAGTCATCCTCAGATCATTATCAGCCTGTGCCACGATTGCAGGAGTCCCTGCCATCATGTTTACAGAGGACAGTATTTGTGGGGAGGGATTTGGGGCTCAGAGTGGGGTAGGTTGGGAGAATGTCAGTATGTGGAAGTGTGGGTCTGTGTGTGTGTATGTGGGGGTCTGTGTGTTTATGTGTGTGTGTTGTGTGTGGGAGTGTGTAATTTAAAATTGTGATGTGTCCTGATAAGCTGAGCTCCTTAGCCTTTGTCCCAGAATGCCTCCTGCAGGGATTCTTCCTGCTTAGCTTGAGGGTGACTATGGAGCTGAGCAGGTGTTCTTCATTACCTCAGTGAGAAGCCAGCTTTCCTCATCAGGCCATTGTCCCTGAAGAGAAGGGCAGGGCTGAGGCCTCTCATTCCAGAGGAAGGGACACCAAGCCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000056345-'12-13,'12-12,13-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGATGACTGTGTCGTCAGA
R:
ACTCTGAGCCCCAAATCCCTC
Band lengths:
257-424
Functional annotations
There are 5 annotated functions for this event
PMID: 12535520
This event
Partially encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: . ELM ID: ELMI001559; ELM sequence: TANNPLYK; Overlap: PARTIAL_RIGHT
PMID: 12606711
This event
Partially encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: alanine scanning, surface plasmon resonance. ELM ID: ELMI001539; ELM sequence: TANNPLY; Overlap: PARTIAL_RIGHT
PMID: 18156175
This event
Partially encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: . ELM ID: ELMI001539; ELM sequence: TANNPLY; Overlap: PARTIAL_RIGHT
PMID: 18156175
This event
Partially encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: . ELM ID: ELMI001559; ELM sequence: TANNPLYK; Overlap: PARTIAL_RIGHT
PMID: 20739287
This event
Partially encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: . ELM ID: ELMI001539; ELM sequence: TANNPLY; Overlap: PARTIAL_RIGHT
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)