GgaEX0003088 @ galGal3
Exon Skipping
Gene
ENSGALG00000002453 | ABCA7
Description
NA
Coordinates
chr28:2376881-2377803:-
Coord C1 exon
chr28:2377711-2377803
Coord A exon
chr28:2377371-2377614
Coord C2 exon
chr28:2376881-2377296
Length
244 bp
Sequences
Splice sites
3' ss Seq
CCGTCCCTTCCTTGGTGCAGGTT
3' ss Score
8.67
5' ss Seq
CAGGTGATG
5' ss Score
5.99
Exon sequences
Seq C1 exon
CATGGAGGAGTGCGAGGCGCTGTGCACCAGGATGGCCATCATGGTCAATGGCCGCTTCCGCTGCCTGGGCAGCGTGCAGCACCTCAAGAACCG
Seq A exon
GTTTGGGGATGGGTACACAGTGGTGGTGCGGGCGGTGGGGTCCGGCCCCGCGCTGGGCGCTGTGCAGCATCTGATGCAGTGCAGCTTCCCCGGCATCGCGCTGCAGGAGCAGCACGGCAGCACGCTGCAGTACCGCCTGCCTTCCCACGCCTGCTCCCTGGCACACGTGTTCGGCGTGCTGGCAGCGCACTGCGGGCGCGGCCCCATCCAGGACTACTCTGTGTCCCAGACCACCCTCGACCAG
Seq C2 exon
GTCTTTGTGCACTTTGCCAGGGAGCAGAGCGACGGGGACGTGGGGCAGGACGTGGGATCGGGGCAGGATGCAACCGCAGGGCGGGATACGGCCCCAGTGCCCGGGAGGAGGCCGATGCCGTTCCTGGAGGACGACAGCTATCGGGAGAGCGCGGTCTGAGTGTGGCCGCGGGGTCTCTGGACCCCCACCCCCCGCCCCAGCCCCGCTCCCGGCTGGGACACAACCACTGATCCCGGTCTGCCGCTGGCCCGGAGCCCGGCTGCGCCGCTCCTGCTGGGCTGGGGGTCCCGATCCGCCGGGTCGGAGCCGCAGGGGAAGGCTGGCCCGCTCCTCGCGGCAGGGCTGCACCCGGTGCTGGGCGCGGGGCTGTGCTGCTCGTGCTGCTGTCACATAGCGAATGGAATAATAAAGCGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002453-'36-38,'36-37,37-38
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.673
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCATGGTCAATGGCCGCTTC
R:
AGACCGGGATCAGTGGTTGTG
Band lengths:
295-539
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]