RnoEX0004922 @ rn6
Exon Skipping
Gene
ENSRNOG00000012939 | Abca7
Description
ATP binding cassette subfamily A member 7 [Source:RGD Symbol;Acc:1303134]
Coordinates
chr7:12742433-12743496:-
Coord C1 exon
chr7:12743404-12743496
Coord A exon
chr7:12742786-12743026
Coord C2 exon
chr7:12742433-12742667
Length
241 bp
Sequences
Splice sites
3' ss Seq
CCTGGTCCTGTCCCCTCCAGATT
3' ss Score
10.54
5' ss Seq
GAGGTGACT
5' ss Score
5.88
Exon sequences
Seq C1 exon
CATGGAAGAGTGTGAAGCGCTCTGCACGCGCCTGGCCATCATGGTGAACGGGCGGTTCCGCTGTCTGGGAAGCGCTCAGCATCTCAAAAGCAG
Seq A exon
ATTCGGGGCTGGCCACACACTGACTCTCAGGGTCCCACCGGACCAGCCGGAACCGGCGATAGCCTTCATTGTGACCACATTCCCTGATGCTGAGCTTCGGGAGGTGCATGGCAGCCGTCTGCGCTTTCAGCTGCCGCCTGGGGGCGGATGCAAGCTGGCACGAGTGTTCAGGGAGCTGGCTGCGCAAGGCAAGGCCCACGGTGTGGAGGACTTCTCTGTGAGCCAGACCACTTTGGAGGAG
Seq C2 exon
GTGTTCCTATATTTCTCCAAAGACCAGGGGGAAGAGGAGGAAGGCAGTGGACAGGAGACTGAAACGAGGGAAGTTTCCACACCTGGCCTGCAGCATCCCAAACGGGTCAGCCGATTCCTGGAAGACCCCAGCTCTGTGGAGACCGTGATCTGAGCGTGCCTGCCTTGGGACTGAGTGGCATAACTCAGAGGGTCGCCCTGGGCTGTGGAGGAAATAAAGAGAAACATGAACGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012939-'64-74,'64-72,69-74
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.074 C2=0.600
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGAAGAGTGTGAAGCGCT
R:
ATTTCCTCCACAGCCCAGGG
Band lengths:
308-549
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]