DreEX6033515 @ danRer10
Exon Skipping
Gene
ENSDARG00000074635 | abca1a
Description
ATP-binding cassette, sub-family A (ABC1), member 1A [Source:ZFIN;Acc:ZDB-GENE-031006-12]
Coordinates
chr1:51987115-51993670:+
Coord C1 exon
chr1:51987115-51987207
Coord A exon
chr1:51988841-51989084
Coord C2 exon
chr1:51990908-51993670
Length
244 bp
Sequences
Splice sites
3' ss Seq
CGTATCTGCTCCTGTTGCAGGTT
3' ss Score
9.59
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
Exon sequences
Seq C1 exon
TATGGAGGAATGTGAAGCTCTTTGCACTCGGATGGCCATCATGGTGAACGGCAGGTTCCGCTGTCTGGGCAGTGTGCAGCATTTAAAGAACAA
Seq A exon
GTTTGGTGACGGGTACACCATCATCCTGCGGGTGGCAGGCGCCGATCCGCGGCTGGAGCCGGTGATGGAGTTCATCGAGCGGGAGCTGCCGGGCAGTACGCTGAAGGAGAAACACCGAAACATGCTGCAGTACCAGCTGTCCTCATCCCTGACCTCCCTCGCTCGCATCTTCAACATCCTCTCCAAGAACAAAGAGCAGCTCCACATCGAGGACTACTCCGTCTCACAGACCACTTTAGACCAA
Seq C2 exon
GTTTTTGTCAATTTTGCCAAGGACCAAAGTGACGAGGACCACTTAAAAGACATTTCCATGAACAAAAATGATGCCGTTGTGGACATTTCGAAACTGAACGCCTTCCTCACAGACGAGAAGGCCAAAGAGACAGTGGTGTGATCTGGTTACAAAAACCTTCACGGGACTAGTGTGTCATTTTTTGTACTACTTTTTAGTTTTTTGTTGTATTTCAGCAGTGTGTTTGTGTGCCCGGAAATGGGCGCTGGACCTAAAACACACACTACTGAAACAAACCAATGCAAATCAATGCAAAAAGAGAAGAAGATTGGAGTAAACACTGAGGAAAGTCGAGCCTGGCGCTCACCACTCCCTCATGGTGAACTCAATGAAACTTGAAGCTTTTCGCTCCACAATCGGTGAATGTTCAATCGACGAAAGACGTCCGCGGAGTTTCTTTCGAGAATCAACGAAACACTGCCAATGAGATCCAGTTCAGGGCCGAAGTTCATCTCCTCATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074635-'50-53,'50-51,51-53=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.065
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCATGGTGAACGGCAGGTT
R:
CATTTCCGGGCACACAAACAC
Band lengths:
297-541
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]