BtaEX6035708 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020661 | ABCA1
Description
Bos taurus ATP-binding cassette, sub-family A (ABC1), member 1 (ABCA1), mRNA. [Source:RefSeq mRNA;Acc:NM_001024693]
Coordinates
chr8:96274035-96275842:-
Coord C1 exon
chr8:96275750-96275842
Coord A exon
chr8:96274806-96275049
Coord C2 exon
chr8:96274035-96274175
Length
244 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTTTCCTGCTTTCAGGTT
3' ss Score
12.79
5' ss Seq
CAAGTAAGC
5' ss Score
7.47
Exon sequences
Seq C1 exon
TATGGAAGAATGTGAAGCTCTCTGCACTAGGATGGCCATTATGGTCAACGGGCGGTTCAGGTGTCTTGGCAGTGTTCAACATCTGAAAAATAG
Seq A exon
GTTTGGAGATGGTTATACAATAGTTGTACGAATAGCAGGGTCGAACCCTGACCTGAAGCCTGTACAGGAGTTCTTTGAACTCGCCTTTCCAGGAAGCGTCCTGAAGGAGAAGCACCGGAACATGCTTCAGTACCAGCTTCCGTCTTCACTGTCTTCCCTGGCCAGGATTTTCAGCATCCTTTCCCAGAGCAAAAAGCGACTCCACATAGAAGACTACTCTGTCTCTCAGACAACACTTGACCAA
Seq C2 exon
GTATTTGTAAACTTTGCCAAGGACCAAAGTGATGATGACCACTTAAAGGACCTGTCATTACACAAAAACCAGACAGTAGTGGACGTTGCAGTCCTCACATCTTTCCTGCAGGATGAGAAAGTGAAAGAAAGTTATGTATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020661-'57-62,'57-60,58-62=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGAAGAATGTGAAGCTCTCTGC
R:
TCTTTCACTTTCTCATCCTGCAGG
Band lengths:
220-464
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]