RnoEX0004751 @ rn6
Exon Skipping
Gene
ENSRNOG00000018126 | Abca1
Description
ATP binding cassette subfamily A member 1 [Source:RGD Symbol;Acc:631344]
Coordinates
chr5:69857771-69863149:-
Coord C1 exon
chr5:69863057-69863149
Coord A exon
chr5:69862174-69862417
Coord C2 exon
chr5:69857771-69861082
Length
244 bp
Sequences
Splice sites
3' ss Seq
TATTCGTTTCCTGCTTTCAGGTT
3' ss Score
10.68
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
Exon sequences
Seq C1 exon
CATGGAGGAATGTGAAGCTCTTTGTACCAGGATGGCCATAATGGTCAATGGGAGGTTCAGGTGCCTCGGCAGTGTCCAACATCTGAAAAACAG
Seq A exon
GTTTGGAGATGGTTATACCATAGTTGTACGAATAGCGGGCTCCAACCCTGACCTAAAGCCTGTCCAGGAGTTCTTTGGACTTGCCTTTCCTGGAAGTGTTCTGAAAGAGAAACATCGAAACATGCTACAGTACCAGCTTCCGTCCTCCTTGTCATCTCTGGCCAGGATATTCAGCATTCTCTCCCAGAGCAAAAAGCGACTCCACATAGAAGACTACTCTGTCTCTCAGACAACACTTGACCAA
Seq C2 exon
GTATTCGTGAACTTTGCCAAGGACCAAAGTGATGATGACCACTTAAAGGACCTGTCACTACACAAAAACCAGACAGTGGTGGATGTGGCTGTTCTCACATCCTTCCTGCAGGACGAGAAAGTGAAAGAAAGTTACGTATGAAGAATCCTGTTAACACAGGGGGAATGAAAGGAAGGGAGAGCTAGGTCTCCCTTTGCACCGGGTCAAGTGTTCCAGAAGAAAGCGTCCCGCGTTTCTGTGGAGTGGAACAAACTGGATTCTGTACTGACACTATTCAATGCAATGCACTTCAATGCAACAAGAACACGATTCCATTACAGGGGCAGTGCCTTTGTAGCCTATGTCTTGTATGGCTCTCTAGTTAAAATGACTTGAAGTTAGTTCATTATCTTATGCAGATGTGAAACTCTGGTGTGGAACCAAGCAGACTCTGGGTTTGGATTCATACTGTTTGTTCCTGTGTATTCTCACTGGGATTGCAACAACAATCCGTCAAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018126-'63-66,'63-65,64-66
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCAATGGGAGGTTCAGGT
R:
TGTTCCACTCCACAGAAACGC
Band lengths:
302-546
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]