GgaEX1005314 @ galGal3
Exon Skipping
Gene
ENSGALG00000015433 | E1C619_CHICK
Description
NA
Coordinates
chrZ:53601954-53603243:-
Coord C1 exon
chrZ:53603151-53603243
Coord A exon
chrZ:53602719-53602962
Coord C2 exon
chrZ:53601954-53602516
Length
244 bp
Sequences
Splice sites
3' ss Seq
GCTGGCCTTCTTGTGTACAGATT
3' ss Score
6.62
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
CATGGAAGAGTGTGAAGCGCTGTGCACTCGAATGGCGATAATGGTGAATGGGCGTTTCAGGTGTCTGGGCAGCGTCCAGCACCTAAAGAACAG
Seq A exon
ATTTGGAGATGGTTATACCATAGTGGTGCGAATTGCAGGGGGTAACCCAGACCTGAAGCCAGTTGAGGAATTCTTTGGGCATGCCTTCCCTGGAAGTGTCCTGAAGGAGAAGCATCGTAATATGTTGCAGTACCAACTTCCGTCTTCGCAGTCTTCGCTGGCCAGAATATTCAGTGTTCTCTCCCAGAACAAAAAGAGACTCCACATAGAAGACTACTCCGTTTCTCAGACCACACTTGACCAA
Seq C2 exon
GTATTTGTGAATTTTGCTAAGGACCAAAGTGACGACGACCACACTAAGGACCTGTCATTGCACAAAAACCAGACTGTGGTAGACATTGCAATCCTTAATTCCTTTCTGCAAGATGAGAAGGTAAAAGAAAGTTGCGTGTGAGCCAATTTCAGCCAAGAAATAATGAGCAGAATGCAAACTTCTTTTGCCTGGGGATAGGTTACTCCCAAAGAAGCTAGAGGGAGAGAAACTGGACACTCTACTGATAACCATTCAATGCAATGCAATTCAATGCAATGAAAACAAAATTCCATTTTAGGGGCAGTGCCTCGTGGAGTCGTCTTGTACTGTTCTCAAGTGAAAGACTTGAATTTAGCTCATTACAGTACAACTCTGTGAAGCTGTGGTAAAGCACCCACCAGATGCTGTTGGTTTTCAACCATACTGCATCTTGTCCTGTACAGTATGTTTTTACTGGGGTTGCAAAAACAGTTCGTTGAGGAATCATGGCCAGTGGTTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015433-'61-77,'61-76,62-77=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.109
Domain overlap (PFAM):
C1:
PF137321=DUF4162=PU(8.3=25.0)
A:
PF137321=DUF4162=FE(84.4=100)
C2:
PF137321=DUF4162=PD(5.2=10.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGAAGAGTGTGAAGCGCTG
R:
GGAGTAACCTATCCCCAGGCA
Band lengths:
298-542
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]