DreEX0009902 @ danRer10
Exon Skipping
Gene
ENSDARG00000079009 | abca1b
Description
ATP-binding cassette, sub-family A (ABC1), member 1B [Source:ZFIN;Acc:ZDB-GENE-030131-9826]
Coordinates
chr14:6205429-6212346:+
Coord C1 exon
chr14:6205429-6205521
Coord A exon
chr14:6208185-6208428
Coord C2 exon
chr14:6210986-6212346
Length
244 bp
Sequences
Splice sites
3' ss Seq
CTGTGTTTGTGTTGCTGCAGATT
3' ss Score
9.92
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
CATGGAGGAGTGTGAAGCTCTGTGCACCAGAATGGCCATCATGGTGAACGGCAGGTTTCGCTGTCTGGGCAGCGTCCAGCACCTCAAGAACAG
Seq A exon
ATTTGGCGACGGGTACACCATCATTCTAAGGGTGGCAGGCCCTGATCCCGACCTGCAGCCGGTGATGAAGTTCATCGAAAGCGAACTTCCAGGGAGCACGCTGAAAGAGAAGCACAGAAACATGCTGCAATATCAGCTGCCTTCATCACTCACATCCCTCGCTCACATCTTCAGCATCCTCGCCAAAAACAAAGAGTTCCTGCGGATAGAGGATTACTCCGTCTCCCAGACCACACTAGACCAG
Seq C2 exon
GTGTTTGTAAACTTTGCGAAGGACCAAAGTGACGACCACTCGGACAGCTCAATCAGCCGTAAAGGGACGGCGGTGAACATGGCCCTGCTGACTCCGCTGTCCACTAAAGACAGCCTGGAGAAGCCCATGGAGAGCTTCGTATGAGCCGGACTCTCTCTTTACACTACATGCCAACGGGAGCCAGTGGAGTCCACACATTTCACATCTTTTTTATTTTTTGTGGCCTTCGAGCTGCAGTCTGCCCTCCTGATCCTCAGGCTGGAGATAAACCCGTGAGAGGCAGACGCCAAATGCAAGTCAATGCAAAAAAAAAAAAAAAAGAAATCAGAAAGACTTCTTGCGTTTCTAGCATGGCGGAATTCAAAGCATGCTAGTCGCGACGTTAAAACTTGAAGCCATCAATTCTGGTGTGTTTAGCGACAGTCGTCGATTATTTGAGATAATCGGCCTGATGGGGGGAAAATGCCAATGATCAATCATTCAGGGGTCCGTGTGTTTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079009-'52-59,'52-57,53-59
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.128
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCCAGCACCTCAAGAACAG
R:
ACGGGTTTATCTCCAGCCTGA
Band lengths:
295-539
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]