GgaEX1005314 @ galGal4
Exon Skipping
Gene
ENSGALG00000015433 | ABCA1
Description
ATP-binding cassette sub-family A member 1 [Source:RefSeq peptide;Acc:NP_989476]
Coordinates
chrZ:54549996-54550947:-
Coord C1 exon
chrZ:54550856-54550947
Coord A exon
chrZ:54550424-54550667
Coord C2 exon
chrZ:54549996-54550221
Length
244 bp
Sequences
Splice sites
3' ss Seq
GCTGGCCTTCTTGTGTACAGATT
3' ss Score
6.62
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
ATGGAAGAGTGTGAAGCGCTGTGCACTCGAATGGCGATAATGGTGAATGGGCGTTTCAGGTGTCTGGGCAGCGTCCAGCACCTAAAGAACAG
Seq A exon
ATTTGGAGATGGTTATACCATAGTGGTGCGAATTGCAGGGGGTAACCCAGACCTGAAGCCAGTTGAGGAATTCTTTGGGCATGCCTTCCCTGGAAGTGTCCTGAAGGAGAAGCATCGTAATATGTTGCAGTACCAACTTCCGTCTTCGCAGTCTTCGCTGGCCAGAATATTCAGTGTTCTCTCCCAGAACAAAAAGAGACTCCACATAGAAGACTACTCCGTTTCTCAGACCACACTTGACCAA
Seq C2 exon
GTATTTGTGAATTTTGCTAAGGACCAAAGTGACGACGACCACACTAAGGACCTGTCATTGCACAAAAACCAGACTGTGGTAGACATTGCAATCCTTAATTCCTTTCTGCAAGATGAGAAGGTAAAAGAAAGTTGCGTGTGAGCCAATTTCAGCCAAGAAATAATGAGCAGAATGCAAACTTCTTTTGCCTGGGGATAGGTTACTCCCAAAGAAGCTAGAGGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015433-'68-88,'68-85,69-88
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.109
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGAAGAGTGTGAAGCGCTG
R:
GGAGTAACCTATCCCCAGGCA
Band lengths:
298-542
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]