MmuEX6093505 @ mm9

Exon Skipping

Gene

ENSMUSG00000015243 | Abca1

Description

ATP-binding cassette, sub-family A (ABC1), member 1 [Source:MGI Symbol;Acc:MGI:99607]

Coordinates

chr4:53043659-53049226:-

Coord C1 exon

chr4:53049134-53049226

Coord A exon

chr4:53048209-53048452

Coord C2 exon

chr4:53043659-53046955

Length

244 bp

Sequences

Splice sites

3' ss Seq

GTTTGGGTTTTTGCTTTCAGGTT

3' ss Score

9.93

5' ss Seq

CAAGTAAGC

5' ss Score

7.47

Exon sequences

Seq C1 exon

TATGGAAGAATGTGAAGCTCTTTGTACAAGGATGGCCATAATGGTCAATGGAAGGTTCAGGTGCCTTGGCAGTGTCCAACATCTGAAAAACAG

Seq A exon

GTTTGGAGATGGTTATACAATAGTTGTACGAATAGCAGGCTCCAACCCTGACCTGAAGCCTGTCCAGGAGTTCTTTGGACTTGCGTTTCCGGGAAGTGTCCTAAAAGAGAAACATCGAAACATGCTTCAGTACCAGCTTCCATCCTCCTTGTCATCTCTAGCCAGGATATTCAGCATCCTCTCCCAGAGCAAAAAGCGACTCCACATAGAAGACTACTCTGTCTCTCAGACAACACTTGACCAA

Seq C2 exon

GTATTTGTGAACTTTGCCAAGGACCAAAGTGATGATGACCACTTAAAGGACCTGTCACTGCACAAAAACCAGACAGTTGTGGATGTGGCCGTTCTCACATCCTTTTTGCAGGATGAGAAAGTGAAAGAAAGTTATGTATGAAGAATCCCGTTCACACAGGGTGAATGAAAGGAAGGAAGAGCGAGGTCTTCCTTTGCACTGTGTCAAGTGTTCTAGAAGAAAGCGTCCTGCGTTTCTGTGGAGAAGAACAAACTGGATACTGTACTGACACTATTCAATGCAATGCACTTCAATGCAACGAGAACACAATTCCATTACAGGGGCAGTGCCTTTGTAGCCTATGTCTTGTATGGCTCTCTAGTGAAAATGACTTGAAGTTAGTTCATTACCTTATACAGATGTGAAACTCTGGTGTGGAACCAAGCAGACTCTGGGTTTGGATTCATACTTTTTTTGTTCCTGTGTATTCTCACTAGGATTGCAACAACAGTCTATCAAAT

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000015243-'50-53,'50-52,52-53=AN

Average complexity

A_S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (No Ref, Alt. Stop)

No structure available

Features