BtaEX6040207 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020766 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr7:45181080-45182208:+
Coord C1 exon
chr7:45181080-45181172
Coord A exon
chr7:45181616-45181856
Coord C2 exon
chr7:45181958-45182208
Length
241 bp
Sequences
Splice sites
3' ss Seq
GTCTCCCCCACCCACCCCAGATT
3' ss Score
6.93
5' ss Seq
GAGGTGACC
5' ss Score
5.57
Exon sequences
Seq C1 exon
CATGGAGGAGTGCGAGGCACTCTGCACACGCCTGGCCATCATGGTGAATGGGCGGTTCTGCTGCCTGGGCAGTGTGCAGCACCTCAAGGGCAG
Seq A exon
ATTCGGGGCTGGCCATACACTGACCCTGAGGGTGCCCTTGTCGAGATCCAAGTTGGCGGCCGACTTTGTGGCCCAGGCATTCCCGGGAGCTGAGCTGCGGGAGGCGCATGGTGGCCGCCTGCGCTTCCAGCTGCTGCCAGGAGGGCGCTGCACCTTGGCGCTAGTCTTTGGATTGCTGGCAGCACACGGCGCAGAGCATGGCGTGGAGGACTTCTCTGTGAGCCAGACCACGCTGGAGGAG
Seq C2 exon
GTATTCTTGTACTTCTCCAAGGATCAGGGCAAAGAGGAAGATGAGAAGGAGACAGAAGTGGGGGCTGACCCTGTGCTAGGCCCGCAGCACCCTAAACTCATAACCCAGTTCCTCGATGACCACAGCATGGCTGAGACGGTCCTCTGAGCCTCCTCCTCTGTGGAGCTGGAGGGACCAAAGCAGGGCAGAGGGGCTGAAGCTTGACCCAGACTCCAGAGGCCCTGGAGGAAATAAAGGGAAGCTGTGGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020766-'50-55,'50-53,51-55=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.292
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCATGGTGAATGGGCGGTTC
R:
CCCTTTATTTCCTCCAGGGCC
Band lengths:
294-535
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]