GgaEX0007092 @ galGal3
Exon Skipping
Gene
ENSGALG00000005141 | HMCN1
Description
NA
Coordinates
chr8_random:341270-342417:+
Coord C1 exon
chr8_random:341270-341453
Coord A exon
chr8_random:341620-341717
Coord C2 exon
chr8_random:342139-342417
Length
98 bp
Sequences
Splice sites
3' ss Seq
TAAATTGATTTTCTCCTTAGGCT
3' ss Score
8.24
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
TTCCTCCAACAATAACCAACAATAAAAGTGAACCAGAGGACCTTGCTGCCCTTTTGGAATCCTCCATAAATATTGGATGTGCTGCTACTGGAATGCCCTCTCCACAGATAAACTGGCTGAAGAATGGCCTTCCTCTGTCTGTCTCCTCACGGATCAGGTTACTGTCAGCTGGGCAAATTCTCAG
Seq A exon
GCTTGTCCGAGTGCAAATATCTGATGCTGGTGTGTACACTTGTGTAGCATCTAGCAGAGCTGGAGTGGACAACAAGCATTATAACCTTCAAATTTTTG
Seq C2 exon
TACCACCAAGCCTGGATAATGCAAGAGGAACAGAGGAAGTGACTGTAGCAAAAGGCAGTTCAGCTTCACTGAAGTGTTTTACTGATGGCGCTCCTCCCCCTGCTATGTCTTGGTTTAAAAATGGACATCCGTTAAGCCTTGGAGCTCACCAGAATTTAAATAACCAAGGAATGGTTCTTCATTTTGTAGAAGCAGAGATTGGTGACGTAGGCAAATACACTTGTGTAGCAGCCAATAAAGCAGGAGATGTCAGCAAGCACTTTTCCCTAAAAGTGTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005141-'77-95,'77-94,78-95
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.000 C2=0.032
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(63.2=88.7)
A:
PF0767911=I-set=PD(35.6=91.2)
C2:
PF0767911=I-set=WD(100=90.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGAAGAATGGCCTTCCTC
R:
CAAGACATAGCAGGGGGAGGA
Band lengths:
182-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]