RnoEX0042115 @ rn6
Exon Skipping
Gene
ENSRNOG00000028627 | Hmcn1
Description
hemicentin 1 [Source:RGD Symbol;Acc:1564772]
Coordinates
chr13:67996873-68000648:-
Coord C1 exon
chr13:68000465-68000648
Coord A exon
chr13:67999781-67999878
Coord C2 exon
chr13:67996873-67997151
Length
98 bp
Sequences
Splice sites
3' ss Seq
TGCTGGGTCCTGTTTTGCAGGAT
3' ss Score
9.26
5' ss Seq
TTGGTATGT
5' ss Score
7.12
Exon sequences
Seq C1 exon
TTCCACCTAAAATCCGAGGTAATAAGGAGGAGGCAGAGAAACTGATGGCTCTGGTAGACACGTCACTAAACATCGAATGCAAAGCCACGGGGACACCTCCACCGCAGATCAGCTGGCTGAAGAACGGCCTTCCTCTGCCCATCTCTTCCCACATTCGCTTGCTGTCAGCAGGGCAGGCCATCAG
Seq A exon
GATCGTGAGAGCTCAGGTGTCTGATGTTGCTGTGTATACTTGTGTGGCCTCCAATAGAGCTGGGATAGATAGTAAGCGCTACAGCCTTCAAGTCTTTG
Seq C2 exon
TGCCACCGAATATGGACAACGCAATGGGAACAGAGGAAATCACACTTGTCAAAGGCAGTTCTACCTCTATGACGTGCTTTACAGATGGAGCCCCTACCCCTAGCATGTCTTGGCTCAGAGACGGCCAGCCTCTGGCGCTTGATGCTCATCTGACCATCGGCACTCAGGGGATGGTCCTTCAGCTCATCAAGGCAGACACGGAAGATACTGGAAAGTACACCTGCGTTGCCTCAAATGAAGCTGGAGAAGTCAGCAAGCATTTTGTCCTGAAAGTCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028627-'79-80,'79-79,80-80
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.000 C2=0.106
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(62.4=85.5)
A:
PF0767911=I-set=PD(36.5=91.2)
C2:
PF0767911=I-set=WD(100=91.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTTCCCACATTCGCTTGC
R:
CCGTCTCTGAGCCAAGACATG
Band lengths:
167-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]