MmuEX6028109 @ mm9
Exon Skipping
Gene
ENSMUSG00000066842 | Hmcn1
Description
hemicentin 1 [Source:MGI Symbol;Acc:MGI:2685047]
Coordinates
chr1:152493708-152496892:-
Coord C1 exon
chr1:152496709-152496892
Coord A exon
chr1:152496017-152496114
Coord C2 exon
chr1:152493708-152493986
Length
98 bp
Sequences
Splice sites
3' ss Seq
TGCTGGGTCCTGTTTTGCAGGAT
3' ss Score
9.26
5' ss Seq
TTGGTATGT
5' ss Score
7.12
Exon sequences
Seq C1 exon
TTCCACCTAAAATCCGAGGTAATAAAGAAGAGGCAGAGAAGCTGATGGCTCTGGTAGACACATCAATAAATATTGAATGCAAAGCCACTGGGACGCCCCCACCGCAGATCAACTGGCTGAAGAACGGCCTTCCTCTACCCATCTCTTCCCACATTCGCTTGCTGTCAGCGGGGCAGGTTGTCAG
Seq A exon
GATCGTGAGAGCTCAGGTGTCTGATATCGCTGTATATACTTGTGTGGCCTCCAATAGAGCTGGGGTAGACAGTAAGCACTACAGCCTTCAAGTCTTTG
Seq C2 exon
TGCCACCGAATATGGACAACGCAATGGGAACAGAGGAAATCACGATTGTCAAAGGCAGTTCTACCTCTATGACGTGCTTTACAGATGGAACCCCAGCTCCTAGCATGTCTTGGCTCAGAGATGGCCAGCCTCTGGCGCCTGATGCTCATCTGACTGTCAGCACTCAGGGAATGGTCCTTCAGCTCATCAAGGCAGAAACGGAAGATACTGGAAAGTACACCTGTGTTGCCACAAATGAAGCTGGAGAAGTCAGCAAGCATTTTGTCCTGAAAGTCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066842-'68-67,'68-66,69-67=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.000 C2=0.170
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(62.4=85.5)
A:
PF0767911=I-set=PD(36.5=91.2)
C2:
PF0767911=I-set=WD(100=92.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAACGGCCTTCCTCTACCC
R:
TAGGAGCTGGGGTTCCATCTG
Band lengths:
167-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: