GgaEX0008589 @ galGal3
Exon Skipping
Gene
ENSGALG00000006066 | MBNL3
Description
NA
Coordinates
chr4:3493228-3497408:-
Coord C1 exon
chr4:3497314-3497408
Coord A exon
chr4:3495849-3495922
Coord C2 exon
chr4:3493228-3493417
Length
74 bp
Sequences
Splice sites
3' ss Seq
CTTTGTTTTCTTTGCTGTAGATA
3' ss Score
10.5
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
TGCCCATGATGCACGGTGCTACGCCCACCACTGTGTCTGCAGCAACAACTCCTGCCACCAGCGTCCCCTTCGCTGCAACAGCTACCGCCAATCAG
Seq A exon
ATATCCCAGTTATCAGTAGATGAACTGAGTAGCAGCATGTTTGTTTCACAGATGTAGAAGTTCCCGATAGAACA
Seq C2 exon
CAGACCATGTTGAAATTCTGAACCGTAAAATTACGGAGCACCAGGACTTCTTGGTGGGAAGCTGCGCATGGCCTTTCTGTATATATCCCCTCTTCCCTTCTCTCGTTCTTTACCACCTCTACAGTAAGCCTGTTGCAGCCTACATGTTAACCAAAAACTGATCAATGGGAATGTCAAAAAAAAAAAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006066-'13-14,'13-13,14-14
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (disopred):
C1=0.953 A=0.600 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTGCAGCAACAACTCCTG
R:
AACGAGAGAAGGGAAGAGGGG
Band lengths:
169-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]