RnoEX0053026 @ rn6
Exon Skipping
Gene
ENSRNOG00000002487 | Mbnl3
Description
muscleblind-like splicing regulator 3 [Source:RGD Symbol;Acc:1565834]
Coordinates
chrX:138384912-138388667:-
Coord C1 exon
chrX:138388573-138388667
Coord A exon
chrX:138387597-138387664
Coord C2 exon
chrX:138384912-138385835
Length
68 bp
Sequences
Splice sites
3' ss Seq
AATCTTTTTTACTACTGTAGATG
3' ss Score
7.68
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
TGCCCATGATGCACGGTGCTACACCTTCCACCATGTCTGCAGCAACACCACCTGCCGGCAACGTTCCCTACGTTCCAACAACTACAGGCAATCAG
Seq A exon
ATGCCCCAATTATCAGTACATGAACTGAATATGAACATGTTTGTTTCACAATAGAACAGAAAGTTTCT
Seq C2 exon
TTGAAATATTGAGCAGCAGAGTTACAGAGTATCAGAATCTCTCAACAAGAAACTCCATGTGGCCTTTCTACATATGTTCTCGTATGTCCAACACAACAATAAGCATGGTGCAGTCAATATATTAAAGCACAAATACCTGTTGACAAATTCAAGTTTTAAAAATCTGTGGAGATGTTGAAGCAAATAGAAAATTAACCACTATGTGTTACCTTATTGGATTAATCGTAAATGAATTATCATATAGAATACAACCACACATCTTTGTCATGTATATGAATTATCAGATCCATGTTACATTAATTTTCCCTCTGATAGAAATTGCCACATTGAATATAACCATAAAATATTGTGACTTTTTTCATTAATGATTTATGCTAACTGAACATCCACAGTGTACTGTAGGCTTACTGTATACTCTTGGTGGATAAATTCTGTTTTTGAAGTGTTACCTTACTATTTTGTTTACAAGATAGTCTATTGGATTGATGTAGAATGTAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002487-'12-11,'12-10,13-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000043258fB8468
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCACCATGTCTGCAGCAA
R:
TGCACCATGCTTATTGTTGTGT
Band lengths:
183-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]