MmuEX6044335 @ mm9
Exon Skipping
Gene
ENSMUSG00000036109 | Mbnl3
Description
muscleblind-like 3 (Drosophila) [Source:MGI Symbol;Acc:MGI:2444912]
Coordinates
chrX:48470446-48477088:-
Coord C1 exon
chrX:48476994-48477088
Coord A exon
chrX:48475976-48476062
Coord C2 exon
chrX:48470446-48474195
Length
87 bp
Sequences
Splice sites
3' ss Seq
GATCCTTTTCACGACTGTAGATA
3' ss Score
6.88
5' ss Seq
TAAGTATTA
5' ss Score
-4.77
Exon sequences
Seq C1 exon
TGCCCATGATGCACGGTGCTACACCTTCCACTGTGTCTACAGCAACACCACCTGCCAGCAACGTTCCCTACGTTCCAACAACTACAGGCAACCAG
Seq A exon
ATACTCCAATTGTCAGTAGATGAGCTGAGTAAGAGCATGGGGTTTTCATAGATGTAGAAGTTACCAATAGAACAGAAAGTTTTTTAA
Seq C2 exon
TTGAAATATTGAGCAGCAGAGTTACAGAGTATCAGAATCTCTCAACAAGAAACTCCGTGTGGCCTTTCTATATGTATTCTCGTATGTCTTCTTGTACCAACACGACAATAAGCATGGTGCAGTCAATATACTAAAGCGCATATACCTGTTGACAAATTCAAATTTTAAAAATCTGTGGAGATGTTAAAGCAAATAGAAAATTAACCAGTATGTGTTACCTTATACGGATTCATTGTATATGAATTAGCATACAATATACAACCATACAGGTTTGTCATGTATATGAATTATCAGATCCATATTACATGAATTTTCCATATGATATGAATTACCATATTGAATATAACTGTAAAATGTTGTGACTGCTTTCCAGTAATGGTTTATAATAAATGAACTTCCACAGTGTACTGTAGGCTTACTGTATACTCTTGGTGGATAAATTCTGTTTTGGAAGTGTTACCTTACTGTTTTGTTTACAAGATAGTCTATAGGATTGATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036109-'19-19,'19-18,20-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTACAGCAACACCACCTGC
R:
TGCACCATGCTTATTGTCGTGT
Band lengths:
182-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: