MmuEX6044335 @ mm10
Exon Skipping
Gene
ENSMUSG00000036109 | Mbnl3
Description
muscleblind-like 3 (Drosophila) [Source:MGI Symbol;Acc:MGI:2444912]
Coordinates
chrX:51117269-51123911:-
Coord C1 exon
chrX:51123817-51123911
Coord A exon
chrX:51122799-51122885
Coord C2 exon
chrX:51117269-51121018
Length
87 bp
Sequences
Splice sites
3' ss Seq
GATCCTTTTCACGACTGTAGATA
3' ss Score
6.88
5' ss Seq
TAAGTATTA
5' ss Score
-4.77
Exon sequences
Seq C1 exon
TGCCCATGATGCACGGTGCTACACCTTCCACTGTGTCTACAGCAACACCACCTGCCAGCAACGTTCCCTACGTTCCAACAACTACAGGCAACCAG
Seq A exon
ATACTCCAATTGTCAGTAGATGAGCTGAGTAAGAGCATGGGGTTTTCATAGATGTAGAAGTTACCAATAGAACAGAAAGTTTTTTAA
Seq C2 exon
TTGAAATATTGAGCAGCAGAGTTACAGAGTATCAGAATCTCTCAACAAGAAACTCCGTGTGGCCTTTCTATATGTATTCTCGTATGTCTTCTTGTACCAACACGACAATAAGCATGGTGCAGTCAATATACTAAAGCGCATATACCTGTTGACAAATTCAAATTTTAAAAATCTGTGGAGATGTTAAAGCAAATAGAAAATTAACCAGTATGTGTTACCTTATACGGATTCATTGTATATGAATTAGCATACAATATACAACCATACAGGTTTGTCATGTATATGAATTATCAGATCCATATTACATGAATTTTCCATATGATATGAATTACCATATTGAATATAACTGTAAAATGTTGTGACTGCTTTCCAGTAATGGTTTATAATAAATGAACTTCCACAGTGTACTGTAGGCTTACTGTATACTCTTGGTGGATAAATTCTGTTTTGGAAGTGTTACCTTACTGTTTTGTTTACAAGATAGTCTATAGGATTGATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036109-'29-25,'29-24,30-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (disopred):
C1=0.953 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTACAGCAACACCACCTGC
R:
TGCACCATGCTTATTGTCGTGT
Band lengths:
182-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types